##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551628_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 240644 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.899843752597196 33.0 31.0 34.0 30.0 34.0 2 31.98743371951929 33.0 31.0 34.0 30.0 34.0 3 31.980722561127642 33.0 31.0 34.0 30.0 34.0 4 35.69023536842805 37.0 35.0 37.0 35.0 37.0 5 35.66760442811788 37.0 35.0 37.0 35.0 37.0 6 35.561597214142054 37.0 35.0 37.0 33.0 37.0 7 35.80884626252888 37.0 35.0 37.0 35.0 37.0 8 35.38297651302339 37.0 35.0 37.0 33.0 37.0 9 37.10522182144579 39.0 37.0 39.0 34.0 39.0 10 37.00273432954904 39.0 37.0 39.0 33.0 39.0 11 37.124702880603714 39.0 37.0 39.0 34.0 39.0 12 37.02663270224897 39.0 37.0 39.0 33.0 39.0 13 36.99049217931883 39.0 37.0 39.0 33.0 39.0 14 38.0661641262612 40.0 37.0 41.0 33.0 41.0 15 37.99346752879772 40.0 37.0 41.0 33.0 41.0 16 37.94784827379864 40.0 37.0 41.0 33.0 41.0 17 37.81043782516913 40.0 36.0 41.0 33.0 41.0 18 37.68424726982597 39.0 36.0 41.0 33.0 41.0 19 37.51244992603181 39.0 36.0 41.0 32.0 41.0 20 37.48166170775087 39.0 35.0 41.0 32.0 41.0 21 37.62043516563887 39.0 36.0 41.0 33.0 41.0 22 37.70609281760609 40.0 36.0 41.0 33.0 41.0 23 37.66032396402985 40.0 36.0 41.0 33.0 41.0 24 37.56467229600572 40.0 35.0 41.0 33.0 41.0 25 37.401032230182345 39.0 35.0 41.0 33.0 41.0 26 37.521500639949465 39.0 36.0 41.0 33.0 41.0 27 37.46813550306677 39.0 35.0 41.0 33.0 41.0 28 37.33524210036402 39.0 35.0 41.0 32.0 41.0 29 37.39936171273749 40.0 35.0 41.0 33.0 41.0 30 37.15924768537757 39.0 35.0 41.0 32.0 41.0 31 37.06774737786938 39.0 35.0 41.0 31.0 41.0 32 36.869874170974555 39.0 35.0 41.0 31.0 41.0 33 36.72502119313177 39.0 35.0 41.0 31.0 41.0 34 36.48011170027094 39.0 35.0 41.0 30.0 41.0 35 36.51119496019015 39.0 35.0 41.0 30.0 41.0 36 36.00359036585163 39.0 35.0 41.0 28.0 41.0 37 35.996621565466 39.0 35.0 41.0 30.0 41.0 38 35.90050863516232 39.0 35.0 41.0 29.0 41.0 39 35.880724223334056 39.0 35.0 41.0 29.0 41.0 40 35.91835242100364 39.0 35.0 41.0 29.0 41.0 41 35.58277372384103 38.0 35.0 40.0 26.0 41.0 42 35.703645218663254 39.0 35.0 40.0 28.0 41.0 43 35.474667974269046 38.0 35.0 40.0 27.0 41.0 44 35.81213327571018 39.0 35.0 40.0 29.0 41.0 45 35.853031864496934 39.0 35.0 40.0 29.0 41.0 46 35.810363025880555 39.0 35.0 40.0 29.0 41.0 47 35.617937700503646 38.0 35.0 40.0 28.0 41.0 48 35.65861189142468 38.0 35.0 40.0 28.0 41.0 49 35.71072621798175 38.0 35.0 40.0 29.0 41.0 50 35.41315802596366 38.0 35.0 40.0 27.0 41.0 51 34.708394973487806 37.0 34.0 40.0 25.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 4.0 9 6.0 10 6.0 11 5.0 12 8.0 13 6.0 14 6.0 15 11.0 16 12.0 17 39.0 18 67.0 19 185.0 20 495.0 21 938.0 22 1484.0 23 1805.0 24 2046.0 25 2348.0 26 2660.0 27 2910.0 28 2869.0 29 3068.0 30 3635.0 31 4690.0 32 6103.0 33 8505.0 34 14260.0 35 18564.0 36 19196.0 37 28723.0 38 50465.0 39 65500.0 40 24.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 49.836688219943156 15.755639035255397 20.07903791492828 14.328634829873174 2 27.86024168481242 35.82428816010372 21.17817190538721 15.137298249696649 3 26.22753943584714 34.653263742291514 25.25390202955403 13.865294792307308 4 24.562424161832418 20.65374578215123 38.40569471917023 16.37813533684613 5 32.95822875284653 24.001013945911804 23.98646963979987 19.054287661441798 6 22.284370273100514 39.45496251724539 24.45562739981051 13.805039809843587 7 65.81298515649672 5.592077924236632 23.42215056265687 5.172786356609764 8 63.44018550223567 16.450441315802596 13.33795980784894 6.7714133741127975 9 57.9436844467346 7.688535762370971 14.194411662040194 20.173368128854243 10 40.88487558385 20.78381343395223 21.268346603281195 17.062964378916572 11 32.478682202755934 20.582270906401156 26.684646199365037 20.254400691477866 12 25.071890427353267 17.496800252655376 31.21166536460498 26.219643955386378 13 25.53897042934792 20.598061867322684 36.09522780538887 17.767739897940526 14 20.2685294459866 29.591845215338843 27.482089725902163 22.657535612772396 15 16.81612672661691 21.26045112282043 39.117950167051745 22.805471983510913 16 17.614401356360432 23.04482970695301 28.587041438805873 30.753727497880686 17 18.277621715064576 26.08043416831502 31.42567444025199 24.216269676368412 18 18.61089410082944 22.774721164874254 31.500889280430844 27.11349545386546 19 20.342082079752664 24.538737720450126 26.972207908778113 28.1469722910191 20 23.40303518890976 24.09908412426655 32.874702880603714 19.623177806219978 21 21.220558168913414 30.86218646631539 28.076328518475425 19.840926846295773 22 18.9021957746713 21.945280164890875 31.30267116570536 27.849852894732468 23 22.195442230016123 27.310466913781354 28.366383537507687 22.127707318694835 24 22.440202124299795 24.607719286581005 26.495154668306707 26.456923920812486 25 18.38774288991207 33.455228470271436 25.02285533817589 23.134173301640597 26 18.9670218247702 22.292265753561278 32.89880487358921 25.84190754807932 27 26.72287694685926 24.25574707867223 25.61501637273317 23.406359601735343 28 17.793919648942005 25.165805089676034 33.61355363108991 23.42672163029205 29 23.29000515283988 21.447033792656374 31.895247751865824 23.36771330263792 30 24.956782633267398 27.430145775502403 27.74887385515533 19.864197736074864 31 25.18492046342315 21.60328119545885 26.573278369707946 26.63851997141005 32 29.673293329565663 27.353268728910756 24.22707401805156 18.746363923472018 33 28.648958627682386 20.94795631721547 24.573644055118766 25.829440999983376 34 27.09812004454713 21.636940875317897 28.519722079087785 22.74521700104719 35 31.7053406692043 20.953774039660246 25.027426405811077 22.31345888532438 36 24.35963497947175 23.52188294742441 33.244959359053205 18.87352271405063 37 25.884709363208724 25.12175661973704 29.665397849104902 19.328136167949335 38 25.565150180349395 23.04856967138179 27.006283140240356 24.379997008028457 39 27.642077093133427 25.47081996642343 26.96888349595253 19.918219444490617 40 29.420637954821228 20.50497830820631 27.506191718887653 22.568192018084808 41 24.6746230946959 22.715297285616927 27.92340552849853 24.686674091188642 42 25.72056647994548 20.962500623327404 31.62139924535829 21.695533651368827 43 24.970911387776134 21.348132511095226 30.046874220840742 23.634081880287894 44 25.343245624241618 20.521600372334238 29.78341450441316 24.35173949901099 45 22.844533834211532 19.295307591296687 28.92072937617393 28.939429198317846 46 28.750768770465918 24.29647113578564 26.863333388740212 20.08942670500823 47 21.151576602782534 21.971044364289156 35.98884659497016 20.888532437958148 48 24.25824038829142 22.660028922391582 27.7999867023487 25.2817439869683 49 23.002027891823605 18.82614983128605 34.97490068316684 23.19692159372351 50 23.683532521068464 19.371353534681937 30.975632053988466 25.969481890261132 51 22.90395771346886 19.528016489087616 27.576419939828128 29.9916058576154 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 69.0 1 208.5 2 348.0 3 1572.0 4 2796.0 5 1838.5 6 881.0 7 847.5 8 814.0 9 851.5 10 889.0 11 847.5 12 806.0 13 748.0 14 690.0 15 685.5 16 681.0 17 649.5 18 618.0 19 631.5 20 645.0 21 647.5 22 650.0 23 771.5 24 893.0 25 1048.5 26 1296.0 27 1388.0 28 1663.0 29 1938.0 30 2327.0 31 2716.0 32 2976.5 33 3237.0 34 3557.0 35 3877.0 36 4351.0 37 4825.0 38 5089.5 39 5354.0 40 6384.0 41 7414.0 42 8395.5 43 9377.0 44 11119.0 45 12861.0 46 27514.5 47 42168.0 48 33184.5 49 24201.0 50 23484.0 51 22767.0 52 19278.0 53 15789.0 54 14736.0 55 13683.0 56 12121.0 57 10559.0 58 10078.0 59 9597.0 60 8968.5 61 8340.0 62 7589.5 63 6839.0 64 6591.5 65 6344.0 66 5425.5 67 4507.0 68 3946.5 69 3386.0 70 3002.5 71 2619.0 72 2233.5 73 1848.0 74 1557.5 75 1030.5 76 794.0 77 683.5 78 573.0 79 392.5 80 212.0 81 155.0 82 98.0 83 78.5 84 59.0 85 35.5 86 12.0 87 10.0 88 8.0 89 4.0 90 0.0 91 0.0 92 0.0 93 1.0 94 2.0 95 1.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 240644.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.42707069363874 #Duplication Level Percentage of deduplicated Percentage of total 1 73.08973419492372 27.355346486926745 2 8.34610174760731 6.247402802480012 3 3.7294872648946327 4.187513505427104 4 2.49483711944574 3.734977809544389 5 2.1706304265760665 4.062016921261282 6 1.800901561077432 4.044148202323765 7 1.573290697932627 4.121856352121807 8 1.3356871627473186 3.9992686291783714 9 1.1069660027091244 3.7287445354964177 >10 4.253547398574379 21.546766177423912 >50 0.04774276641573957 1.1701933146058079 >100 0.03775009437523594 2.655374744435764 >500 0.0022205937867785844 0.6391183657186549 >1k 0.007772078253725046 4.348331975864763 >5k 0.003330890680167877 8.158940177191203 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCG 7152 2.972025066072705 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGC 6319 2.6258705806087 No Hit GAATCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTC 6163 2.5610445305097986 No Hit GCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGC 2421 1.006050431342564 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1836 0.7629527434716843 No Hit GAATGACTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCT 1544 0.6416116753378435 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGTAGGGTT 1343 0.5580858030950283 No Hit GAACTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCT 1197 0.4974152690281079 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTA 1099 0.4566912119146955 No Hit GAATGATCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTC 1024 0.42552484167483917 No Hit CCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGC 851 0.35363441432157044 No Hit CTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGCT 687 0.2854839513970845 Illumina Single End Adapter 1 (95% over 21bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCC 428 0.17785608616878043 No Hit GAATGCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTT 399 0.16580508967603597 No Hit GAATGATACGGCGACCACCGATGAATGATACGGCGAGCACCGATCGAATGC 392 0.16289622845364937 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATG 327 0.13588537424577385 No Hit TCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGC 322 0.1338076162297834 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGT 284 0.11801665530825618 No Hit GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCTGTAGGGT 284 0.11801665530825618 No Hit CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA 241 0.10014793637073852 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.1555160319808513E-4 0.0 0.0 0.29421053506424427 0.0 2 4.1555160319808513E-4 0.0 0.0 1.9360549192998786 0.0 3 4.1555160319808513E-4 0.0 0.0 2.3466199032595867 0.0 4 4.1555160319808513E-4 0.0 0.0 3.3809278436196206 0.0 5 4.1555160319808513E-4 0.0 0.0 7.293346187729592 0.0 6 4.1555160319808513E-4 0.0 0.0 8.390402420172537 0.0 7 4.1555160319808513E-4 0.0 0.0 9.875168298399295 0.0 8 4.1555160319808513E-4 0.0 0.0 11.507454995761373 0.0 9 4.1555160319808513E-4 0.0 0.0 12.087149482222703 0.0 10 4.1555160319808513E-4 0.0 0.0 16.228952311298016 0.0 11 4.1555160319808513E-4 0.0 0.0 17.665929755156995 0.0 12 4.1555160319808513E-4 0.0 0.0 21.50396436229451 0.0 13 4.1555160319808513E-4 0.0 0.0 22.130616179917222 0.0 14 4.1555160319808513E-4 0.0 0.0 22.421086750552682 0.0 15 4.1555160319808513E-4 0.0 0.0 23.21853027708981 0.0 16 4.1555160319808513E-4 0.0 0.0 23.93868120543209 0.0 17 4.1555160319808513E-4 0.0 0.0 24.70952942936454 0.0 18 4.1555160319808513E-4 0.0 0.0 25.48785758215455 0.0 19 4.1555160319808513E-4 0.0 0.0 26.591147088645467 0.0 20 4.1555160319808513E-4 0.0 0.0 27.16169943983644 0.0 21 4.1555160319808513E-4 0.0 0.0 27.687372217882018 0.0 22 4.1555160319808513E-4 0.0 0.0 28.26332673991456 0.0 23 4.1555160319808513E-4 0.0 0.0 28.72832898389322 0.0 24 4.1555160319808513E-4 0.0 0.0 29.159255996409634 0.0 25 4.1555160319808513E-4 0.0 0.0 29.523279200811157 0.0 26 4.1555160319808513E-4 0.0 0.0 29.84450059008328 0.0 27 4.1555160319808513E-4 0.0 0.0 30.25381891923339 0.0 28 4.1555160319808513E-4 0.0 0.0 30.625737604095676 0.0 29 4.1555160319808513E-4 0.0 0.0 30.973138744369276 0.0 30 4.1555160319808513E-4 0.0 0.0 31.365419457788267 0.0 31 8.311032063961703E-4 0.0 0.0 31.70991173683948 0.0 32 8.311032063961703E-4 0.0 0.0 32.05648177390668 0.0 33 8.311032063961703E-4 0.0 0.0 32.36191220225728 0.0 34 8.311032063961703E-4 0.0 0.0 32.68978241718057 0.0 35 8.311032063961703E-4 0.0 0.0 33.017652632103854 0.0 36 8.311032063961703E-4 0.0 0.0 33.348847259852725 0.0 37 8.311032063961703E-4 0.0 0.0 33.65178437858413 0.0 38 8.311032063961703E-4 0.0 0.0 33.934775020362025 0.0 39 8.311032063961703E-4 0.0 0.0 34.237296587490235 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCGATCG 100 0.0 45.0 40 ACCGCTC 20 7.022158E-4 45.0 39 GTCAGCG 25 3.8815848E-5 45.0 35 CGCTCGA 20 7.022158E-4 45.0 41 TATTAGT 20 7.022158E-4 45.0 30 CTCGAAT 20 7.022158E-4 45.0 43 CGATCGA 95 0.0 45.0 41 TTCGAAG 20 7.022158E-4 45.0 1 TATCGAA 20 7.022158E-4 45.0 41 TACCGTT 25 3.8815848E-5 45.0 15 TAGTAGG 35 1.206572E-7 45.0 2 TAGTGGT 30 2.1583255E-6 44.999996 15 TACGGCT 680 0.0 42.683823 7 CGAATGC 95 0.0 42.63158 45 ATCGAAT 90 0.0 42.500004 43 CCGATGA 715 0.0 42.482517 18 CGTTTTT 940 0.0 42.36702 1 CGATGAA 725 0.0 42.206898 19 GATGAAT 780 0.0 41.826927 20 TCGAATG 110 0.0 40.909092 44 >>END_MODULE