##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551624_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 213322 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.805036517564997 33.0 31.0 34.0 30.0 34.0 2 31.881493704353044 33.0 31.0 34.0 30.0 34.0 3 31.878695118178154 33.0 31.0 34.0 30.0 34.0 4 35.582115299875305 37.0 35.0 37.0 33.0 37.0 5 35.61775625580109 37.0 35.0 37.0 33.0 37.0 6 35.51155530137539 37.0 35.0 37.0 33.0 37.0 7 35.81051180843982 37.0 35.0 37.0 35.0 37.0 8 35.44065309719579 37.0 35.0 37.0 33.0 37.0 9 37.20601719466347 39.0 37.0 39.0 34.0 39.0 10 37.04719625730117 39.0 37.0 39.0 33.0 39.0 11 37.153439401468205 39.0 37.0 39.0 34.0 39.0 12 37.019027573339834 39.0 37.0 39.0 33.0 39.0 13 36.9020072941375 39.0 37.0 39.0 33.0 39.0 14 37.835755337002276 40.0 37.0 41.0 33.0 41.0 15 37.86472093829985 40.0 36.0 41.0 33.0 41.0 16 37.80136601006929 39.0 36.0 41.0 33.0 41.0 17 37.76224674435829 39.0 36.0 41.0 33.0 41.0 18 37.61995012235025 39.0 36.0 41.0 33.0 41.0 19 37.42630858514359 39.0 36.0 41.0 32.0 41.0 20 37.512000637533866 39.0 35.0 41.0 33.0 41.0 21 37.500173446714356 39.0 35.0 41.0 33.0 41.0 22 37.643131041336574 39.0 35.0 41.0 33.0 41.0 23 37.61516861833285 39.0 35.0 41.0 33.0 41.0 24 37.481244316104295 39.0 35.0 41.0 33.0 41.0 25 37.22367594528459 39.0 35.0 41.0 33.0 41.0 26 37.42091767375142 39.0 35.0 41.0 33.0 41.0 27 37.434015244559866 39.0 35.0 41.0 33.0 41.0 28 37.248169434001184 39.0 35.0 41.0 33.0 41.0 29 37.40310422741208 39.0 35.0 41.0 33.0 41.0 30 37.15024704437423 39.0 35.0 41.0 32.0 41.0 31 36.95927283636943 39.0 35.0 41.0 32.0 41.0 32 36.86983058474981 39.0 35.0 41.0 32.0 41.0 33 36.70409521755843 39.0 35.0 41.0 31.0 41.0 34 36.58025426350775 39.0 35.0 41.0 31.0 41.0 35 36.573255454196 39.0 35.0 41.0 31.0 41.0 36 36.35068581768407 39.0 35.0 41.0 30.0 41.0 37 36.292824931324475 39.0 35.0 41.0 30.0 41.0 38 36.08019801051931 39.0 35.0 40.0 30.0 41.0 39 36.03332989565071 39.0 35.0 40.0 30.0 41.0 40 35.97856292365532 39.0 35.0 40.0 30.0 41.0 41 35.706945368972725 38.0 35.0 40.0 28.0 41.0 42 35.77729910651503 38.0 35.0 40.0 29.0 41.0 43 35.759434094936296 38.0 35.0 40.0 29.0 41.0 44 35.84477925389786 38.0 35.0 40.0 29.0 41.0 45 35.78359475347128 38.0 35.0 40.0 29.0 41.0 46 35.61898913379773 38.0 35.0 40.0 28.0 41.0 47 35.357956516439934 38.0 35.0 40.0 27.0 41.0 48 35.35876749702328 38.0 35.0 40.0 28.0 41.0 49 35.41122809649263 38.0 35.0 40.0 28.0 41.0 50 35.25437601372573 38.0 35.0 40.0 27.0 41.0 51 34.15102989846336 36.0 33.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 2.0 9 6.0 10 4.0 11 1.0 12 5.0 13 6.0 14 4.0 15 11.0 16 24.0 17 21.0 18 53.0 19 151.0 20 304.0 21 522.0 22 819.0 23 1141.0 24 1552.0 25 1830.0 26 2398.0 27 2656.0 28 2721.0 29 3009.0 30 3534.0 31 4425.0 32 5687.0 33 8009.0 34 14233.0 35 20085.0 36 16931.0 37 25448.0 38 46042.0 39 51676.0 40 10.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.0837513242891 18.661928914973608 20.3415493948116 13.91277036592569 2 28.67261698277721 34.14743908270127 21.686464593431527 15.493479341089994 3 26.273895800714413 32.52547791601429 27.171599741236253 14.029026542035044 4 23.93236515689896 21.658338099211523 37.63840579030761 16.77089095358191 5 30.4989640074629 24.221130497557684 25.73105446226831 19.548851032711113 6 21.74974920542654 37.81607147879731 26.027320201385702 14.406859114390452 7 66.54212880059252 5.108240125256654 22.208679836116293 6.14095123803452 8 62.61192000825044 13.073663288362194 15.478478544172658 8.835938159214708 9 57.91292037389486 6.247363141166875 17.294512520977676 18.545203963960585 10 38.7611216845895 20.430616626508282 23.65906938806124 17.149192300840983 11 31.30150664254038 20.729695015047675 28.05945940878109 19.90933893363085 12 26.507814477644125 16.49009478628552 33.60881671838816 23.393274017682188 13 23.73688602206992 22.05867186694293 38.3012535040924 15.90318860689474 14 17.88094992546479 30.6963182419066 29.267961110433994 22.154770722194616 15 13.999962498007706 23.312644734251506 43.8023269986218 18.885065769118984 16 14.866258519983875 24.03408931099465 33.32520790166978 27.774444267351704 17 15.614892041139687 24.40489025979505 33.74569899025886 26.234518708806405 18 17.822353062506448 22.399939996812332 34.66309147673471 25.11461546394652 19 17.979861430138477 25.773712978501983 29.21170812199398 27.03471746936556 20 21.481609960529152 25.710897141410637 33.32614545147711 19.4813474465831 21 19.268054865414726 31.184312916623696 29.791113902926092 19.756518315035486 22 16.317585621736157 23.55828278377289 31.032898622739335 29.091232971751623 23 18.162214867664844 29.556257676189045 29.68001425075707 22.601513205389036 24 21.455827340827483 23.207639155830154 28.621051743373865 26.715481759968497 25 16.425872624483176 31.260254451017712 27.69522130863202 24.618651615867094 26 16.928399321213938 23.791263910895267 31.837785132335156 27.44255163555564 27 24.18784747939734 26.43046661853911 26.227018310347738 23.15466759171581 28 15.6866146014007 26.609069856836143 32.91268598644303 24.791629555320128 29 20.62187678720432 19.939809302369188 30.953675664019652 28.484638246406842 30 23.98721182062797 26.66157264604682 29.140454336636633 20.210761196688573 31 24.23191232034202 26.22514321073307 23.344052652797178 26.198891816127734 32 26.78486044571118 25.80605844685499 26.318429416562754 21.090651690871077 33 24.270351862442695 23.7851698371476 26.96487000871921 24.979608291690496 34 26.364369357122097 22.238681429950965 26.27764599994375 25.11930321298319 35 27.712097205164028 20.98611488735339 26.64844694874415 24.653340958738433 36 24.07112252838432 28.960913548532265 25.235559389092543 21.732404533990866 37 25.266967307638215 24.045339908682646 32.30890391052025 18.378788873158886 38 21.516299303400494 27.95539138016707 27.231602928905595 23.296706387526836 39 26.105136835394383 23.66516346180891 30.66116012413159 19.568539578665117 40 27.30098161464828 19.458846251207095 32.01216939649919 21.228002737645436 41 24.2984783566627 26.87017747817853 23.119509473940802 25.711834691217973 42 25.64386233018629 22.510102099174016 29.785019829178427 22.061015741461265 43 24.927574277383485 24.85303906770047 25.99544350793636 24.223943146979686 44 22.54572899185269 22.112580980864607 30.522402752646233 24.819287274636466 45 21.94147814102624 20.377176287490272 28.549329183112853 29.13201638837063 46 28.297597059843802 23.67360141007491 27.183787888731587 20.845013641349695 47 19.12695361941103 22.2452442786023 36.84898885253279 21.778813249453876 48 23.389992593356524 22.686830237856388 27.948828531515733 25.974348637271355 49 22.215242684767627 17.377016904023026 36.57006778485107 23.837672626358277 50 22.04882759396593 18.601925727304263 32.20014813286956 27.14909854586025 51 20.486869614948294 18.91178593862799 27.440676535940973 33.16066791048274 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 57.0 1 130.0 2 203.0 3 1497.0 4 2791.0 5 1758.5 6 726.0 7 762.0 8 798.0 9 832.0 10 866.0 11 854.5 12 843.0 13 848.5 14 854.0 15 838.0 16 822.0 17 736.5 18 651.0 19 633.5 20 616.0 21 628.5 22 641.0 23 688.0 24 735.0 25 804.0 26 1007.0 27 1141.0 28 1262.0 29 1383.0 30 1511.0 31 1639.0 32 1983.5 33 2328.0 34 2779.0 35 3230.0 36 3367.0 37 3504.0 38 3970.0 39 4436.0 40 5648.0 41 6860.0 42 8191.0 43 9522.0 44 12019.5 45 14517.0 46 27778.5 47 41040.0 48 34258.0 49 27476.0 50 26574.5 51 25673.0 52 20377.5 53 15082.0 54 12536.5 55 9991.0 56 8630.5 57 7270.0 58 6394.5 59 5519.0 60 5631.0 61 5743.0 62 5360.0 63 4977.0 64 4257.5 65 3538.0 66 2904.5 67 2271.0 68 1904.0 69 1537.0 70 1345.5 71 1154.0 72 953.0 73 752.0 74 662.5 75 447.5 76 322.0 77 243.5 78 165.0 79 127.5 80 90.0 81 79.5 82 69.0 83 49.5 84 30.0 85 16.0 86 2.0 87 3.5 88 5.0 89 4.0 90 3.0 91 2.0 92 1.0 93 1.0 94 1.0 95 1.0 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 213322.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.38443292299903 #Duplication Level Percentage of deduplicated Percentage of total 1 75.45222634508349 27.452864683436307 2 10.023706452277882 7.2941375010547445 3 3.6448670377241803 3.9784926074197693 4 1.8488455988455987 2.690767947047187 5 1.2226860441146155 2.2243369178987633 6 0.8915687487116057 1.9463534000243765 7 0.7279426922284066 1.854004744002025 8 0.6210059781488353 1.8075960285390162 9 0.5385487528344671 1.763531187594341 >10 4.88301381158524 30.949456689886652 >50 0.08761080189651618 2.1005803433307393 >100 0.04122861265718408 2.6720169509005167 >500 0.007730364873222016 2.419816052727801 >1k 0.00515357658214801 3.3137697940203075 >5k 0.003865182436611008 7.532275152117457 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCG 5514 2.5848248188184995 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGC 5335 2.50091411106215 No Hit GAATCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTC 5219 2.4465362222368063 No Hit GCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC 2736 1.282568136432248 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1902 0.8916098667741724 No Hit GAATGACTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCT 1413 0.6623789388811281 No Hit GAACTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCT 1018 0.4772128519327589 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTC 969 0.4542428816530878 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCGATTGGATCGTA 935 0.4383045349284181 No Hit CTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGCT 908 0.42564761252941563 Illumina Single End Adapter 2 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC 878 0.41158436541941285 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCGATTGGAT 857 0.401740092442411 No Hit TCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC 615 0.28829656575505574 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCC 465 0.21798033020504212 No Hit ACTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC 360 0.16875896532003262 No Hit GAATGCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTT 330 0.15469571821002992 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATG 294 0.13781982167802664 No Hit GGCAAGGTGGGGTGAGGCCCGGAGTTGGGGAAGCTAGGAGGCTTAAAGCCT 231 0.10828700274702094 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCGATTGGATCGT 221 0.10359925371035336 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 214 0.10031782938468607 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.687749036667573E-4 0.0 0.0 0.4448673835797527 0.0 2 4.687749036667573E-4 0.0 0.0 2.6917054968545204 0.0 3 4.687749036667573E-4 0.0 0.0 3.403305800620658 0.0 4 4.687749036667573E-4 0.0 0.0 4.86588350006094 0.0 5 4.687749036667573E-4 0.0 0.0 9.790363863080227 0.0 6 4.687749036667573E-4 0.0 0.0 11.396386683042536 0.0 7 4.687749036667573E-4 0.0 0.0 13.512905373097945 0.0 8 4.687749036667573E-4 0.0 0.0 16.33399274336449 0.0 9 4.687749036667573E-4 0.0 0.0 17.413112571605367 0.0 10 4.687749036667573E-4 0.0 0.0 22.039452095892596 0.0 11 4.687749036667573E-4 0.0 0.0 24.47426894553773 0.0 12 4.687749036667573E-4 0.0 0.0 28.983883518811936 0.0 13 4.687749036667573E-4 0.0 0.0 29.964560617282793 0.0 14 4.687749036667573E-4 0.0 0.0 30.357862761459202 0.0 15 4.687749036667573E-4 0.0 0.0 31.327289262242058 0.0 16 4.687749036667573E-4 0.0 0.0 32.42562886153327 0.0 17 4.687749036667573E-4 0.0 0.0 33.73163574314886 0.0 18 4.687749036667573E-4 0.0 0.0 35.1524924761628 0.0 19 4.687749036667573E-4 0.0 0.0 36.35021235503136 0.0 20 9.375498073335146E-4 0.0 0.0 37.13822296809518 0.0 21 9.375498073335146E-4 0.0 0.0 37.90982645953066 0.0 22 9.375498073335146E-4 0.0 0.0 38.72127581777782 0.0 23 9.375498073335146E-4 0.0 0.0 39.435219996062294 0.0 24 9.375498073335146E-4 0.0 0.0 40.01931352603107 0.0 25 9.375498073335146E-4 0.0 0.0 40.49324495363816 0.0 26 9.375498073335146E-4 0.0 0.0 40.927799289337244 0.0 27 9.375498073335146E-4 0.0 0.0 41.41157498992134 0.0 28 9.375498073335146E-4 0.0 0.0 41.85831747311576 0.0 29 9.375498073335146E-4 0.0 0.0 42.31349790457618 0.0 30 9.375498073335146E-4 0.0 0.0 42.82540009938028 0.0 31 9.375498073335146E-4 0.0 0.0 43.266986058634366 0.0 32 9.375498073335146E-4 0.0 0.0 43.710447117503115 0.0 33 9.375498073335146E-4 0.0 0.0 44.10140538716119 0.0 34 9.375498073335146E-4 0.0 0.0 44.506426903929274 0.0 35 9.375498073335146E-4 0.0 0.0 44.95035673770169 0.0 36 9.375498073335146E-4 0.0 0.0 45.36522252744677 0.0 37 9.375498073335146E-4 0.0 0.0 45.764618745370846 0.0 38 9.375498073335146E-4 0.0 0.0 46.09229240303391 0.0 39 9.375498073335146E-4 0.0 0.0 46.49731391980199 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGCGGGT 35 1.2057171E-7 45.000004 4 AATGCGG 45 3.8198777E-10 45.000004 2 CGCTAGG 35 1.2057171E-7 45.000004 2 ATCCTTG 20 7.0203585E-4 45.0 29 TTCTAGG 20 7.0203585E-4 45.0 2 AGCGTCG 20 7.0203585E-4 45.0 17 CCTTAAC 25 3.8800932E-5 45.0 34 GTATTTA 20 7.0203585E-4 45.0 41 ACGCCCT 20 7.0203585E-4 45.0 39 GAATGCG 20 7.0203585E-4 45.0 1 TAAAGCG 20 7.0203585E-4 45.0 1 CTATATA 25 3.8800932E-5 45.0 40 ATCAGAC 25 3.8800932E-5 45.0 21 TGCGGGC 20 7.0203585E-4 45.0 4 TATGCGG 25 3.8800932E-5 45.0 2 CGTTCGG 25 3.8800932E-5 45.0 45 ACGGGAC 20 7.0203585E-4 45.0 5 CGCCTTA 25 3.8800932E-5 45.0 32 TATTGCT 20 7.0203585E-4 45.0 22 TAACCCG 25 3.8800932E-5 45.0 37 >>END_MODULE