SRR3551618_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551618_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	510740
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCG	8852	1.7331714766808943	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTC	8780	1.719074284371696	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGC	7577	1.483533696205506	No Hit
GCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCTGC	3601	0.7050554097975487	TruSeq Adapter, Index 19 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2622	0.5133727532599757	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCT	2115	0.41410502408270355	No Hit
GAACTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCT	2052	0.4017699808121549	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGCTCCTTT	1454	0.28468496691075695	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTA	1413	0.27665739906801895	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTC	1412	0.27646160473039116	No Hit
CTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCTGCT	1344	0.2631475897717038	TruSeq Adapter, Index 16 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCTGC	1243	0.24337236167130044	TruSeq Adapter, Index 19 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCC	761	0.14899949093472217	No Hit
TCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCTGC	686	0.13431491561264047	TruSeq Adapter, Index 19 (95% over 21bp)
GAATGCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTT	562	0.11003641774679877	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTATCG	20	7.0296E-4	45.000004	44
TGGACCG	20	7.0296E-4	45.000004	15
TTATCCG	20	7.0296E-4	45.000004	1
CGGATAT	20	7.0296E-4	45.000004	21
TATTACG	20	7.0296E-4	45.000004	1
GCGATAT	20	7.0296E-4	45.000004	9
CAAGATA	55	1.8189894E-12	45.000004	38
TTAAACG	20	7.0296E-4	45.000004	1
ATACGCT	20	7.0296E-4	45.000004	9
CAGTACG	20	7.0296E-4	45.000004	1
TACGAAT	25	3.8877508E-5	45.0	12
CGGTCTA	25	3.8877508E-5	45.0	31
AATACGG	25	3.8877508E-5	45.0	2
GATGAAT	640	0.0	42.539066	20
CGTTTTT	1430	0.0	42.325176	1
TAAACGG	50	1.0786607E-9	40.5	2
CCGATGA	645	0.0	40.46512	18
TGAATGA	675	0.0	40.333332	22
ATGAATG	685	0.0	40.072994	21
TGGGCGA	225	0.0	40.0	6