##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551618_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 510740 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.93462427066609 33.0 31.0 34.0 30.0 34.0 2 32.01792888749657 33.0 31.0 34.0 30.0 34.0 3 32.00577201707327 33.0 31.0 34.0 30.0 34.0 4 35.698067509887615 37.0 35.0 37.0 33.0 37.0 5 35.70259427497357 37.0 35.0 37.0 35.0 37.0 6 35.582108313427575 37.0 35.0 37.0 33.0 37.0 7 35.87062889141246 37.0 35.0 37.0 35.0 37.0 8 35.55910639464307 37.0 35.0 37.0 33.0 37.0 9 37.31049066061009 39.0 37.0 39.0 34.0 39.0 10 37.07922230489094 39.0 37.0 39.0 34.0 39.0 11 37.19737243998904 39.0 37.0 39.0 34.0 39.0 12 37.127975094960256 39.0 37.0 39.0 34.0 39.0 13 37.13357872890316 39.0 37.0 39.0 33.0 39.0 14 38.22034694756628 40.0 38.0 41.0 33.0 41.0 15 38.20637506363316 40.0 37.0 41.0 33.0 41.0 16 38.070437012961584 40.0 37.0 41.0 33.0 41.0 17 38.01468653326546 40.0 37.0 41.0 33.0 41.0 18 37.82794768375299 39.0 37.0 41.0 33.0 41.0 19 37.67923992638133 39.0 36.0 41.0 33.0 41.0 20 37.84590985628696 40.0 36.0 41.0 33.0 41.0 21 37.83069272036653 39.0 36.0 41.0 33.0 41.0 22 37.96840858362376 40.0 37.0 41.0 34.0 41.0 23 37.96826565375729 40.0 37.0 41.0 34.0 41.0 24 37.83084739789325 40.0 36.0 41.0 33.0 41.0 25 37.57180169949485 39.0 36.0 41.0 33.0 41.0 26 37.72378509613502 40.0 36.0 41.0 33.0 41.0 27 37.75997963738889 40.0 36.0 41.0 33.0 41.0 28 37.642142773231 40.0 36.0 41.0 33.0 41.0 29 37.72215804518933 40.0 36.0 41.0 33.0 41.0 30 37.46213141715942 40.0 36.0 41.0 33.0 41.0 31 37.46719074284372 40.0 36.0 41.0 33.0 41.0 32 37.37956690292517 40.0 36.0 41.0 33.0 41.0 33 37.31838704624662 40.0 36.0 41.0 33.0 41.0 34 37.216507420605396 40.0 36.0 41.0 32.0 41.0 35 37.18935661980655 40.0 36.0 41.0 32.0 41.0 36 37.00952539452559 40.0 35.0 41.0 32.0 41.0 37 36.991373301484124 40.0 35.0 41.0 32.0 41.0 38 36.91565767318009 39.0 35.0 41.0 31.0 41.0 39 36.76897051337275 39.0 35.0 41.0 31.0 41.0 40 36.725729333907665 39.0 35.0 41.0 31.0 41.0 41 36.55373771390531 39.0 35.0 41.0 30.0 41.0 42 36.568712064847084 39.0 35.0 41.0 31.0 41.0 43 36.549729803814074 39.0 35.0 41.0 31.0 41.0 44 36.63566198065552 39.0 35.0 41.0 31.0 41.0 45 36.60573677409249 39.0 35.0 41.0 31.0 41.0 46 36.524848259388335 39.0 35.0 41.0 31.0 41.0 47 36.39709245408623 39.0 35.0 41.0 31.0 41.0 48 36.367139836315935 39.0 35.0 41.0 31.0 41.0 49 36.394631319262245 39.0 35.0 41.0 31.0 41.0 50 36.25778086697733 39.0 35.0 41.0 31.0 41.0 51 35.43042644006735 37.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 6.0 9 12.0 10 13.0 11 13.0 12 17.0 13 14.0 14 21.0 15 27.0 16 44.0 17 77.0 18 119.0 19 294.0 20 571.0 21 1111.0 22 1829.0 23 2482.0 24 2887.0 25 3543.0 26 4129.0 27 4826.0 28 5084.0 29 5647.0 30 6614.0 31 8680.0 32 11634.0 33 16664.0 34 29638.0 35 38567.0 36 40406.0 37 59766.0 38 108154.0 39 157786.0 40 65.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.57203273681325 17.63304225241806 22.056036339429063 13.738888671339625 2 29.447076790539217 30.709950268238245 23.2576261894506 16.58534675177194 3 28.957199357794572 30.160355562517132 25.376316716920545 15.506128362767749 4 26.624701413635115 22.683948780201277 32.774209969847675 17.917139836315936 5 29.838861260132354 26.669929905627125 23.85029564944982 19.640913184790694 6 24.331362337001213 37.292164310608136 23.467321925049927 14.909151427340722 7 71.38563652739163 5.940204409288484 17.16274425343619 5.511414809883698 8 70.22868778634923 11.320632807299214 11.627050945686651 6.823628460664917 9 64.0188745741473 7.404354466068841 13.797235383952696 14.779535575831146 10 39.70885381994753 22.452715667462897 20.72326428319693 17.115166229392646 11 31.25954497395935 21.808160707992325 25.86971844774249 21.06257587030583 12 25.76438109409876 18.812898930962916 31.446724360731487 23.975995614206838 13 24.59450992677292 20.973881035360456 35.268434036887655 19.16317500097897 14 20.53216900967224 27.69491326310843 29.043544660688415 22.72937306653092 15 17.871715549986295 22.711359987469162 37.668481027528685 21.74844343501586 16 19.69377765595019 22.916160864627795 30.26138544073305 27.12867603868896 17 19.758781376042606 24.74018091396797 30.878137604260488 24.62290010572894 18 20.253553667227944 23.758859693777655 30.664525981908604 25.3230606570858 19 21.230371617652818 25.548811528370603 27.15569565728159 26.06512119669499 20 24.27438618475154 24.62838234718252 29.70474213885734 21.3924893292086 21 22.514782472490896 28.523319105611467 27.21267180953127 21.74922661236637 22 20.467361083917453 22.913419743901006 28.828954066648393 27.790265105533145 23 21.912127501272664 26.672279437678664 27.833144065473626 23.58244899557505 24 22.700591298899635 23.80663351215883 27.404941849081727 26.087833339859813 25 20.21733171476681 29.15710537651251 25.77475819399303 24.85080471472765 26 20.106120530994243 23.830520421349416 30.03602615812351 26.027332889532833 27 25.548811528370603 24.45197164897991 25.808434820065003 24.190782002584484 28 19.992559815170143 24.55574264792262 30.467361083917453 24.98433645298978 29 23.31988878881623 21.52053882601715 30.24572189372283 24.913850491443785 30 24.33155813133884 25.101029878215925 26.681481771547165 23.885930218898068 31 23.57070133531738 21.798175196773308 24.53929592356189 30.091827544347417 32 24.855503778830716 23.96013627285899 28.06750988761405 23.116850060696244 33 23.048322042526532 21.630771038101578 25.23906488624349 30.081842033128403 34 21.369581391706152 21.36723185965462 28.65802560989936 28.605161138739867 35 23.62963543094334 20.438383521948545 29.968868700317188 25.96311234679093 36 21.72651446920155 22.88874965735991 29.504444531464152 25.880291341974388 37 22.076007361867095 22.115166229392646 31.746681285977207 24.06214512276305 38 20.230841524063123 22.623252535536672 27.405920820769865 29.73998511963034 39 22.229314328229627 21.602772447820808 30.02858597329365 26.139327250655914 40 21.262677683361396 20.424873712652232 32.204840036026155 26.107608567960217 41 19.67733093158946 22.43313623370012 29.93871637232251 27.950816462387905 42 20.98582448995575 21.794063515683128 33.607902259466655 23.612209734894467 43 23.54916395817833 20.58601245251987 30.354191956768613 25.510631632533187 44 22.896189842189763 21.097818851078827 29.10659043740455 26.89940086932686 45 21.497630888514703 19.735286055527272 28.981086266985155 29.785996788972863 46 25.171124251086656 22.76833613971884 28.50785135293887 23.55268825625563 47 19.866664056075496 21.45925519833966 34.177272193288175 24.496808552296667 48 21.89940086932686 21.600227121431647 28.814073696988686 27.68629831225281 49 21.384265967028234 19.535771625484593 33.75866389944003 25.321298508047146 50 21.252692172142382 19.63523514899949 31.253866938168144 27.85820574068998 51 21.28108235109841 19.582370677839997 28.46869248541332 30.667854485648277 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 141.0 1 385.0 2 629.0 3 2415.5 4 4202.0 5 2840.5 6 1479.0 7 1460.5 8 1442.0 9 1462.0 10 1482.0 11 1399.0 12 1316.0 13 1285.5 14 1255.0 15 1288.5 16 1322.0 17 1229.5 18 1137.0 19 1180.0 20 1223.0 21 1265.5 22 1308.0 23 1514.0 24 1720.0 25 2033.0 26 2835.0 27 3324.0 28 4121.5 29 4919.0 30 5271.5 31 5624.0 32 6416.5 33 7209.0 34 7844.0 35 8479.0 36 9476.5 37 10474.0 38 11462.0 39 12450.0 40 13995.5 41 15541.0 42 17972.0 43 20403.0 44 23792.5 45 27182.0 46 49447.5 47 71713.0 48 61883.5 49 52054.0 50 51003.0 51 49952.0 52 42975.0 53 35998.0 54 32449.5 55 28901.0 56 26840.0 57 24779.0 58 23727.5 59 22676.0 60 22170.0 61 21664.0 62 20120.5 63 18577.0 64 16942.5 65 15308.0 66 12861.5 67 10415.0 68 8857.0 69 7299.0 70 6363.0 71 5427.0 72 4679.5 73 3932.0 74 3239.0 75 2003.5 76 1461.0 77 1137.0 78 813.0 79 595.5 80 378.0 81 243.5 82 109.0 83 90.5 84 72.0 85 56.0 86 40.0 87 25.5 88 11.0 89 8.0 90 5.0 91 3.0 92 1.0 93 1.0 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 510740.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.79741032064676 #Duplication Level Percentage of deduplicated Percentage of total 1 73.38145037033718 24.067215377201247 2 9.026117610215033 5.92066565729276 3 3.3931662559096436 3.3386119794372378 4 1.9071918960317749 2.502038206974656 5 1.3424940944810082 2.2015164834869374 6 1.0732489365728997 2.1119871449387504 7 0.9681706462047835 2.2227442960788815 8 0.8490979033208725 2.2278569870092406 9 0.7349319357795744 2.169347782995892 >10 7.200606261663835 40.30384416116021 >50 0.07075651727689818 1.5548224550935419 >100 0.04377309967130141 2.632932333517877 >500 0.001798894507039784 0.39509718091107077 >1k 0.005396683521119352 3.3936271547045482 >5k 0.001798894507039784 4.957692799197204 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCG 8852 1.7331714766808943 No Hit GAATCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTC 8780 1.719074284371696 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGC 7577 1.483533696205506 No Hit GCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCTGC 3601 0.7050554097975487 TruSeq Adapter, Index 19 (95% over 21bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2622 0.5133727532599757 No Hit GAATGACTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCT 2115 0.41410502408270355 No Hit GAACTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCT 2052 0.4017699808121549 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGCTCCTTT 1454 0.28468496691075695 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTA 1413 0.27665739906801895 No Hit GAATGATCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTC 1412 0.27646160473039116 No Hit CTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCTGCT 1344 0.2631475897717038 TruSeq Adapter, Index 16 (95% over 23bp) CCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCTGC 1243 0.24337236167130044 TruSeq Adapter, Index 19 (95% over 21bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCC 761 0.14899949093472217 No Hit TCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCTGC 686 0.13431491561264047 TruSeq Adapter, Index 19 (95% over 21bp) GAATGCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTT 562 0.11003641774679877 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.957943376277558E-4 0.0 0.0 0.2711751576144418 0.0 2 1.957943376277558E-4 0.0 0.0 1.483337901867878 0.0 3 1.957943376277558E-4 0.0 0.0 1.8759055488115284 0.0 4 1.957943376277558E-4 0.0 0.0 2.8123898656850845 0.0 5 1.957943376277558E-4 0.0 0.0 5.929631515056585 0.0 6 1.957943376277558E-4 0.0 0.0 7.110858753964835 0.0 7 1.957943376277558E-4 0.0 0.0 8.553079844930885 0.0 8 1.957943376277558E-4 0.0 0.0 10.45365548028351 0.0 9 1.957943376277558E-4 0.0 0.0 11.264831421075302 0.0 10 1.957943376277558E-4 0.0 0.0 14.382464659122059 0.0 11 1.957943376277558E-4 0.0 0.0 15.9911109370717 0.0 12 1.957943376277558E-4 0.0 0.0 18.813290519638173 0.0 13 3.915886752555116E-4 0.0 0.0 19.450992677291772 0.0 14 3.915886752555116E-4 0.0 0.0 19.72353839526961 0.0 15 3.915886752555116E-4 0.0 0.0 20.378470454634453 0.0 16 3.915886752555116E-4 0.0 0.0 21.11074127736226 0.0 17 3.915886752555116E-4 0.0 0.0 21.95324431217449 0.0 18 3.915886752555116E-4 0.0 0.0 22.83471042017465 0.0 19 3.915886752555116E-4 0.0 0.0 23.68954849825743 0.0 20 3.915886752555116E-4 0.0 0.0 24.25833104906606 0.0 21 3.915886752555116E-4 0.0 0.0 24.867643027763638 0.0 22 3.915886752555116E-4 0.0 0.0 25.513568547597604 0.0 23 3.915886752555116E-4 0.0 0.0 26.070211849473313 0.0 24 3.915886752555116E-4 0.0 0.0 26.53894349375416 0.0 25 5.873830128832674E-4 0.0 0.0 26.945216744331756 0.0 26 5.873830128832674E-4 0.0 0.0 27.331518972471315 0.0 27 5.873830128832674E-4 0.0 0.0 27.767944551043584 0.0 28 5.873830128832674E-4 0.0 0.0 28.139757998198693 0.0 29 7.831773505110232E-4 0.0 0.0 28.539178446959315 0.0 30 7.831773505110232E-4 0.0 0.0 28.976974585894975 0.0 31 7.831773505110232E-4 0.0 0.0 29.378352978031874 0.0 32 7.831773505110232E-4 0.0 0.0 29.780514547519285 0.0 33 7.831773505110232E-4 0.0 0.0 30.15526490973881 0.0 34 7.831773505110232E-4 0.0 0.0 30.53236480400987 0.0 35 7.831773505110232E-4 0.0 0.0 30.90652778321651 0.0 36 9.78971688138779E-4 0.0 0.0 31.267964130477345 0.0 37 9.78971688138779E-4 0.0 0.0 31.6591612170576 0.0 38 9.78971688138779E-4 0.0 0.0 32.03156204722559 0.0 39 9.78971688138779E-4 0.0 0.0 32.40885773583428 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACTATCG 20 7.0296E-4 45.000004 44 TGGACCG 20 7.0296E-4 45.000004 15 TTATCCG 20 7.0296E-4 45.000004 1 CGGATAT 20 7.0296E-4 45.000004 21 TATTACG 20 7.0296E-4 45.000004 1 GCGATAT 20 7.0296E-4 45.000004 9 CAAGATA 55 1.8189894E-12 45.000004 38 TTAAACG 20 7.0296E-4 45.000004 1 ATACGCT 20 7.0296E-4 45.000004 9 CAGTACG 20 7.0296E-4 45.000004 1 TACGAAT 25 3.8877508E-5 45.0 12 CGGTCTA 25 3.8877508E-5 45.0 31 AATACGG 25 3.8877508E-5 45.0 2 GATGAAT 640 0.0 42.539066 20 CGTTTTT 1430 0.0 42.325176 1 TAAACGG 50 1.0786607E-9 40.5 2 CCGATGA 645 0.0 40.46512 18 TGAATGA 675 0.0 40.333332 22 ATGAATG 685 0.0 40.072994 21 TGGGCGA 225 0.0 40.0 6 >>END_MODULE