SRR3551616_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551616_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	323602
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTC	6710	2.073534774197934	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6142	1.8980105190944432	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGC	4996	1.5438717931285963	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCG	4976	1.5376913616108676	No Hit
GCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGC	1792	0.5537666639884797	No Hit
GAACTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCT	1569	0.4848548525658062	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCT	1168	0.3609372006353484	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTC	925	0.2858449576949462	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCGAATCAT	887	0.27410213781126197	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGCGAATCATCGTA	771	0.2382556350084363	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTT	743	0.2296030308836163	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCC	742	0.22929400930772986	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	469	0.14493111909073492	No Hit
CGCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTG	434	0.13411536393470994	No Hit
CCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGC	427	0.13195221290350492	No Hit
GAATGATACGGCGACCACCGATGAATGATACGGCGACCAACCATCGAATGC	376	0.11619211253329707	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTT	352	0.10877559471202279	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTATTA	20	7.0257665E-4	45.000004	8
TCGAATA	20	7.0257665E-4	45.000004	44
GCGTAAG	20	7.0257665E-4	45.000004	1
AAACGAT	35	1.2083183E-7	45.0	16
CTACGAA	50	2.1827873E-11	45.0	11
CTCGAGG	30	2.160652E-6	44.999996	2
CCGCGAA	65	0.0	44.999996	41
CATCGAA	175	0.0	43.714287	42
ATCGAAT	175	0.0	43.714287	43
CGTTTTT	2745	0.0	42.95082	1
TCGAATG	160	0.0	42.187504	44
CCGATGA	715	0.0	42.16783	18
CTCATGC	75	0.0	42.0	23
GATGAAT	800	0.0	41.90625	20
ACCCGCG	70	0.0	41.785713	39
CCCGCGA	70	0.0	41.785713	40
CACCCGC	65	0.0	41.53846	38
CGATGAA	775	0.0	41.516125	19
TACGAAT	55	6.002665E-11	40.909092	12
ATGAATG	805	0.0	40.807453	21