##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551615_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 530504 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.9369599475216 33.0 31.0 34.0 30.0 34.0 2 32.04317026827319 33.0 31.0 34.0 30.0 34.0 3 31.99692556512298 33.0 31.0 34.0 30.0 34.0 4 35.649261834029524 37.0 35.0 37.0 33.0 37.0 5 35.665197623392096 37.0 35.0 37.0 35.0 37.0 6 35.547905388083784 37.0 35.0 37.0 33.0 37.0 7 35.819475442220984 37.0 35.0 37.0 35.0 37.0 8 35.52133819914647 37.0 35.0 37.0 33.0 37.0 9 37.27379058404838 39.0 37.0 39.0 34.0 39.0 10 37.073622442055104 39.0 37.0 39.0 33.0 39.0 11 37.15566140877355 39.0 37.0 39.0 34.0 39.0 12 37.12134687014613 39.0 37.0 39.0 34.0 39.0 13 37.17105808815768 39.0 37.0 39.0 33.0 39.0 14 38.278297618868095 40.0 38.0 41.0 33.0 41.0 15 38.249828465006864 40.0 38.0 41.0 33.0 41.0 16 38.10329799586808 40.0 37.0 41.0 33.0 41.0 17 38.00361354485546 40.0 37.0 41.0 33.0 41.0 18 37.784644413614224 39.0 37.0 41.0 33.0 41.0 19 37.56173186253073 39.0 37.0 41.0 33.0 41.0 20 37.586035166558595 39.0 35.0 41.0 33.0 41.0 21 37.55891567264337 39.0 35.0 41.0 33.0 41.0 22 37.6758874579645 40.0 35.0 41.0 33.0 41.0 23 37.6717800431288 40.0 35.0 41.0 33.0 41.0 24 37.597750441089985 40.0 35.0 41.0 33.0 41.0 25 37.298122163075114 39.0 35.0 41.0 33.0 41.0 26 37.42323337807066 39.0 35.0 41.0 33.0 41.0 27 37.4124926485003 39.0 35.0 41.0 33.0 41.0 28 37.23817728047291 39.0 35.0 41.0 32.0 41.0 29 37.26318180447273 39.0 35.0 41.0 33.0 41.0 30 37.00565122977395 39.0 35.0 41.0 32.0 41.0 31 36.94709936211603 39.0 35.0 41.0 31.0 41.0 32 36.68373659765054 39.0 35.0 41.0 31.0 41.0 33 36.491085835356564 39.0 35.0 41.0 30.0 41.0 34 36.162339963506405 39.0 35.0 41.0 29.0 41.0 35 35.901555878937764 39.0 35.0 41.0 27.0 41.0 36 35.78908547343658 39.0 35.0 41.0 27.0 41.0 37 35.68556316257747 39.0 35.0 41.0 27.0 41.0 38 35.644147829234086 39.0 35.0 41.0 26.0 41.0 39 35.50628270474869 39.0 35.0 41.0 26.0 41.0 40 35.40542766878289 38.0 35.0 40.0 26.0 41.0 41 35.20733679670653 38.0 35.0 40.0 24.0 41.0 42 35.064985372400585 38.0 35.0 40.0 23.0 41.0 43 35.173614148055435 38.0 35.0 40.0 24.0 41.0 44 35.3529850858806 38.0 35.0 40.0 26.0 41.0 45 35.35534133578635 38.0 35.0 40.0 26.0 41.0 46 35.283882873644686 38.0 35.0 40.0 26.0 41.0 47 35.10569571577217 38.0 35.0 40.0 25.0 41.0 48 35.07704183191833 38.0 35.0 40.0 25.0 41.0 49 35.047356853105725 38.0 35.0 40.0 26.0 41.0 50 34.90650777373969 37.0 34.0 40.0 24.0 41.0 51 33.98376638064934 36.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 8.0 9 17.0 10 16.0 11 23.0 12 22.0 13 19.0 14 28.0 15 37.0 16 65.0 17 110.0 18 218.0 19 454.0 20 950.0 21 1933.0 22 2935.0 23 3777.0 24 4611.0 25 5864.0 26 7463.0 27 8546.0 28 8453.0 29 8236.0 30 8965.0 31 10619.0 32 13271.0 33 17791.0 34 30495.0 35 39483.0 36 43687.0 37 63301.0 38 108688.0 39 140372.0 40 47.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.01813369927466 16.338048346478065 20.20757619169695 18.436241762550328 2 31.71305023147799 31.32360924705563 21.795688628172456 15.167651893293923 3 27.790553888377843 30.03389229864431 27.961900381523986 14.213653431453862 4 25.756073469757062 21.793049628278016 36.13639105454436 16.314485847420563 5 29.213540331458386 25.58774297649028 26.328924946843003 18.86979174520833 6 23.94609654215614 36.14977455400902 26.291601948335924 13.612526955498922 7 68.91503174339873 5.773377769064889 20.551400177943993 4.760190309592387 8 68.3732827650687 11.346380046144798 14.727692910892284 5.552644277894228 9 62.18181201272752 7.337362206505511 16.137672854493086 14.343152926273884 10 39.79743790810248 21.33857614645695 23.238656070453757 15.625329874986804 11 30.837656266493752 21.498989640040413 28.037300378507986 19.626053714957852 12 23.89388204424472 18.83906624643735 33.07986367680545 24.18718803251248 13 24.98454300061828 20.36648168534073 36.38728454450862 18.26169076953237 14 19.928407702863694 27.711760891529565 31.27327974906881 21.08655165653793 15 18.398353264065868 21.640930134362797 37.57671949693122 22.383997104640116 16 20.61190867552365 22.392102604315898 31.28854824845807 25.70744047170238 17 20.401165683953373 25.554189977832404 31.11531675538733 22.929327582826897 18 20.879578664816854 23.196620572135178 30.296284288148627 25.62751647489934 19 21.756103629755856 23.75458054981678 28.649925354002985 25.839390466424383 20 24.82412950703482 23.742139550314416 31.33623874655045 20.097492196100312 21 22.526126098954958 27.881976384720947 29.63936181442553 19.952535701898572 22 20.615867175365313 21.722927631082893 32.55621069775157 25.10499449580022 23 23.471453561141857 24.56324551747018 30.22936679082533 21.735934130562633 24 23.28615806855368 24.30405802783768 28.977915340883385 23.43186856272526 25 21.053375657864972 28.822402847103884 27.504976399800945 22.619245095230195 26 21.399650144013993 23.135735074570597 30.701747771930087 24.76286700948532 27 25.811869467525224 24.018669039253236 27.316287907348485 22.85317358587306 28 21.001915159923392 25.22261849109526 30.283843288646267 23.49162306033508 29 24.4797400208104 23.241483570340655 29.011091339556344 23.267685069292597 30 23.143463574261457 28.037111878515525 27.860487385580505 20.958937161642513 31 24.560983517560658 23.823006047079758 24.70480901180764 26.911201423551944 32 26.081612956735484 28.083294376668228 25.10763349569466 20.727459170901632 33 26.812238927510446 25.4458024821679 24.113861535445537 23.628097054876118 34 27.22788141088474 23.80641804774328 25.520259979189603 23.445440562182377 35 25.18020599279176 25.354191485832338 27.288201408471945 22.177401112903954 36 25.07785049688598 29.142475834300967 24.6955725121771 21.084101156635953 37 22.375703104971876 29.071411337143548 27.537398398504067 21.015487159380513 38 22.71179859152806 25.9566374617345 25.7464599701416 25.585103976595843 39 26.031094958756203 27.164168413433266 25.758712469651503 21.04602415815903 40 24.57851401685944 23.516128059354877 29.85425180582993 22.051106117955754 41 22.169672613213095 27.03504591859816 26.739854930405805 24.05542653778294 42 22.373818105047274 24.91536350338546 30.76960776921569 21.941210622351576 43 24.28728152850874 25.31799948728002 27.088956916441724 23.305762067769518 44 23.44883356204666 23.91631354334746 28.423348363066065 24.211504531539816 45 22.917452083301917 22.249031110038757 27.733815390647383 27.099701416011946 46 26.11761645529534 25.32252348709906 26.922699923092004 21.637160134513593 47 21.471091641156335 24.832235006710597 32.06629921734803 21.630374134785036 48 22.070144617194217 24.6013225159471 28.374715365011387 24.9538175018473 49 21.671090133156394 22.654306093827756 32.959789181608436 22.714814591407418 50 22.567973097281076 22.779093088836277 31.012961259481546 23.639972554401098 51 22.314629107414834 22.322546107098155 28.456524361739028 26.906300423747982 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 130.0 1 422.0 2 714.0 3 6745.5 4 12777.0 5 8160.5 6 3544.0 7 3374.5 8 3205.0 9 3110.5 10 3016.0 11 2987.0 12 2958.0 13 2866.0 14 2774.0 15 2553.0 16 2332.0 17 2201.0 18 2070.0 19 1967.0 20 1864.0 21 1850.5 22 1837.0 23 1929.5 24 2022.0 25 2350.0 26 3111.0 27 3544.0 28 3950.0 29 4356.0 30 5155.0 31 5954.0 32 6942.5 33 7931.0 34 8950.5 35 9970.0 36 10851.0 37 11732.0 38 12438.0 39 13144.0 40 14591.0 41 16038.0 42 17425.5 43 18813.0 44 21877.5 45 24942.0 46 45920.5 47 66899.0 48 56487.5 49 46076.0 50 46072.0 51 46068.0 52 40640.5 53 35213.0 54 33065.5 55 30918.0 56 28999.0 57 27080.0 58 25663.0 59 24246.0 60 23676.0 61 23106.0 62 21867.5 63 20629.0 64 18572.0 65 16515.0 66 13990.0 67 11465.0 68 9699.5 69 7934.0 70 6986.0 71 6038.0 72 5130.0 73 4222.0 74 3398.0 75 2060.0 76 1546.0 77 1212.5 78 879.0 79 677.0 80 475.0 81 333.5 82 192.0 83 116.5 84 41.0 85 30.0 86 19.0 87 16.5 88 14.0 89 8.5 90 3.0 91 3.0 92 3.0 93 3.0 94 3.0 95 2.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 530504.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.59109323756351 #Duplication Level Percentage of deduplicated Percentage of total 1 72.75720480146468 26.62265664594898 2 7.772312812105719 5.6879484555853965 3 3.650641050645879 4.007428411831804 4 2.501798381261064 3.6617415132123625 5 2.107383006702946 3.855572404276221 6 1.662231376727863 3.6493717972951667 7 1.5738245173145378 4.031157175683375 8 1.329316579643678 3.891291752638467 9 1.1802967732318723 3.8869514349590517 >10 5.371912354633566 27.618378537393877 >50 0.05015888660011768 1.2332919441992636 >100 0.03309452311757348 2.239717205197374 >500 0.004136815389696685 0.9897744952595643 >1k 0.0036197134659845995 2.51161664119202 >5k 0.001551305771136257 4.074518061731879 >10k+ 5.171019237120856E-4 2.0385835235952103 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTC 10774 2.0308989187640436 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8443 1.5915054363397827 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGC 7988 1.5057379397704824 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCG 5103 0.9619154615233815 No Hit GCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTCTGC 2931 0.5524934779002608 TruSeq Adapter, Index 15 (95% over 21bp) GAACTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTCT 2802 0.5281769788729208 No Hit GAATGCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTT 1866 0.3517409859303606 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGACAGGTAT 1588 0.2993379880264805 No Hit GAATGACTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCT 1546 0.2914209883431605 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTC 1412 0.2661619893535204 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGACAGGTATCGTA 1129 0.21281649148734033 No Hit CCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTCTGC 894 0.16851899325924027 TruSeq Adapter, Index 15 (95% over 21bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCC 711 0.13402349463906021 No Hit CTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTCTGCT 700 0.1319499947220002 TruSeq Adapter, Index 21 (95% over 23bp) CGCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTCTG 683 0.1287454948501802 TruSeq Adapter, Index 21 (95% over 21bp) TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC 601 0.11328849546846018 No Hit GAGGAGCTGAGAACCCCAGTCTAATAATGTCCATCGACACCTCCTTATCCC 559 0.10537149578514018 No Hit CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA 549 0.10348649586054015 No Hit CGTTTCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTT 534 0.10065899597364017 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.1379819944807202 0.0 2 0.0 0.0 0.0 0.9647429614102816 0.0 3 0.0 0.0 0.0 1.292167448313302 0.0 4 0.0 0.0 0.0 2.1594559136217635 0.0 5 0.0 0.0 0.0 5.065748797370048 0.0 6 0.0 0.0 0.0 6.33001824679927 0.0 7 0.0 0.0 0.0 7.359605205615792 0.0 8 0.0 0.0 0.0 8.721894651124215 0.0 9 0.0 0.0 0.0 9.329430126822794 0.0 10 0.0 0.0 0.0 11.192752552289898 0.0 11 0.0 0.0 0.0 12.1814350127426 0.0 12 0.0 0.0 0.0 14.531087418756503 0.0 13 0.0 0.0 0.0 15.027030898918763 0.0 14 0.0 0.0 0.0 15.263032889478685 0.0 15 0.0 0.0 0.0 15.720522371179106 0.0 16 0.0 0.0 0.0 16.154826353806946 0.0 17 0.0 0.0 0.0 16.605341335786346 0.0 18 0.0 0.0 0.0 17.107128315714867 0.0 19 0.0 0.0 0.0 17.74256179029753 0.0 20 0.0 0.0 0.0 18.11164477553421 0.0 21 0.0 0.0 0.0 18.46451676141933 0.0 22 1.884999924600003E-4 0.0 0.0 18.86206324551747 0.0 23 1.884999924600003E-4 0.0 0.0 19.222286731108532 0.0 24 1.884999924600003E-4 0.0 0.0 19.53444271862229 0.0 25 1.884999924600003E-4 0.0 0.0 19.81662720733491 0.0 26 1.884999924600003E-4 0.0 0.0 20.134438194622472 0.0 27 3.769999849200006E-4 0.0 0.0 20.45451118181955 0.0 28 3.769999849200006E-4 0.0 0.0 20.743293170268274 0.0 29 3.769999849200006E-4 0.0 0.0 21.010209159591632 0.0 30 3.769999849200006E-4 0.0 0.0 21.329905146803796 0.0 31 3.769999849200006E-4 0.0 0.0 21.627169634913216 0.0 32 3.769999849200006E-4 0.0 0.0 21.929523622819055 0.0 33 3.769999849200006E-4 0.0 0.0 22.237155610513774 0.0 34 5.65499977380001E-4 0.0 0.0 22.523298599068056 0.0 35 5.65499977380001E-4 0.0 0.0 22.813777087448916 0.0 36 5.65499977380001E-4 0.0 0.0 23.09068357637266 0.0 37 5.65499977380001E-4 0.0 0.0 23.361935065522598 0.0 38 5.65499977380001E-4 0.0 0.0 23.642611554295538 0.0 39 5.65499977380001E-4 0.0 0.0 23.940441542382338 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTAATC 20 7.0298475E-4 45.000004 43 CGCGTTT 25 3.8879552E-5 45.000004 14 AGTAACG 20 7.0298475E-4 45.000004 1 TATTAGT 90 0.0 45.0 30 CGTAAGC 35 1.2102828E-7 45.0 43 TCGAATA 30 2.163284E-6 44.999996 44 CGTTTTT 3660 0.0 42.971313 1 GATGAAT 1170 0.0 42.307693 20 CGATGAA 1070 0.0 42.266354 19 CCGATGA 1090 0.0 40.66514 18 GAATGCG 50 1.0786607E-9 40.500004 1 CCGATCG 100 0.0 40.500004 40 CGTAAGG 85 0.0 39.705883 2 TACGGCT 885 0.0 39.152546 7 CGTTAGG 75 0.0 39.000004 2 ATGAATG 1260 0.0 38.928574 21 ATTAGTC 100 0.0 38.250004 31 ATATTAG 100 0.0 38.250004 29 GCGTTAG 30 1.1390935E-4 37.499996 1 TACGCGG 30 1.1390935E-4 37.499996 2 >>END_MODULE