SRR3551611_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551611_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	426428
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTC	6989	1.6389636703030757	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCG	6584	1.5439886686615325	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGC	6158	1.4440890373052426	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2892	0.6781918635736865	No Hit
GCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGC	2274	0.5332670462539983	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCT	1435	0.33651636384102357	No Hit
GAACTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCT	1429	0.33510932677966737	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGCTCTGTT	1171	0.274606733141351	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTC	1125	0.2638194490042868	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTT	1090	0.25561173281304234	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTA	1069	0.2506871030982956	No Hit
CTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGCT	669	0.15688463234121586	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGC	643	0.15078747174200569	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCC	555	0.13015092817544816	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	548	0.12850938493719924	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGCA	20	7.0282904E-4	45.0	1
CCGATCG	50	2.1827873E-11	45.0	40
AACCCCG	25	3.8866645E-5	45.0	36
CTAAGCG	20	7.0282904E-4	45.0	1
AGTATCG	20	7.0282904E-4	45.0	1
GTTACGG	20	7.0282904E-4	45.0	2
TACGAAT	50	2.1827873E-11	45.0	12
CGCAACT	25	3.8866645E-5	45.0	43
CGTCATA	40	6.7975634E-9	45.0	38
ATCGATC	20	7.0282904E-4	45.0	29
CGAACCC	30	2.1622782E-6	44.999996	34
CGTTTTT	1365	0.0	41.703297	1
ACAACGA	60	3.6379788E-12	41.249996	13
ACGGCTG	740	0.0	41.0473	8
GATGAAT	740	0.0	41.0473	20
CTACGAA	55	6.002665E-11	40.909092	11
CGAATAT	55	6.002665E-11	40.909092	14
GCTACGA	55	6.002665E-11	40.909092	10
CCGATGA	705	0.0	40.851063	18
CGATGAA	700	0.0	40.821426	19