SRR3551610_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551610_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	502986
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9480	1.8847443069986043	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTC	8199	1.6300652503250586	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGC	6204	1.2334339325547827	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCG	6060	1.2048049051067027	No Hit
GCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTCTGC	2790	0.5546874068065513	No Hit
GAACTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTCT	2316	0.460450191456621	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCT	1446	0.28748315062447066	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGCTACCAT	1183	0.2351954129936022	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTC	1102	0.21909158505405718	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGCTACCATCGTA	1007	0.2002043794459488	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTT	913	0.18151598652845208	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCC	848	0.16859316163869373	No Hit
CTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTCTGCT	819	0.1628275936109554	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTT	664	0.13201162656614696	No Hit
CCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTCTGC	586	0.11650423669843693	No Hit
CGCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTCTG	571	0.11352204633926194	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	535	0.10636478947724191	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	30	2.1630567E-6	45.000004	25
GCGATAT	30	2.1630567E-6	45.000004	9
GTACGAG	30	2.1630567E-6	45.000004	1
CAAACGC	20	7.0295E-4	45.0	25
CAAACGA	45	3.8380676E-10	45.0	15
ACCGAAT	20	7.0295E-4	45.0	39
GCAAACG	20	7.0295E-4	45.0	1
ACGATGA	45	3.8380676E-10	45.0	18
CCGGTAT	25	3.887667E-5	45.0	42
ACCGTCC	25	3.887667E-5	45.0	27
GTAAGCG	20	7.0295E-4	45.0	1
ATACCGG	20	7.0295E-4	45.0	2
CGTTTTT	4390	0.0	43.052395	1
CGATGAA	660	0.0	41.590908	19
GATGAAT	695	0.0	41.43885	20
CGAATAT	60	3.6379788E-12	41.250004	14
GCTACGA	60	3.6379788E-12	41.250004	10
CATTCTA	55	6.002665E-11	40.909092	45
CCGATGA	630	0.0	40.0	18
CCTATGC	45	1.9246727E-8	40.0	35