SRR3551608_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551608_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	719002
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13265	1.8449183729669736	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCCGTCTTC	2890	0.401946030748176	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCCG	1878	0.26119537915054475	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGC	1776	0.2470090486535503	No Hit
GCTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCCGTCTTCTGC	1154	0.16050024895619205	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	1101	0.1531289203646165	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCC	912	0.12684248444371504	No Hit
GAACTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCCGTCTTCT	824	0.11460329734826885	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	789	0.10973543884439821	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAACCCG	20	7.0315227E-4	45.0	23
GTAATCG	20	7.0315227E-4	45.0	1
CGTTTTT	5895	0.0	43.015266	1
TACGAAT	80	0.0	42.1875	12
GTTGATC	120	0.0	41.249996	16
CGGTCTA	45	1.9264917E-8	40.0	31
CGAATAT	85	0.0	39.705883	14
TGCGTAG	80	0.0	39.375	1
TAGGGCG	290	0.0	38.793102	5
TTAAGCG	35	6.245027E-6	38.571426	1
GCGATCA	100	0.0	38.249996	9
CTACGAA	95	0.0	37.894737	11
TCGATAG	30	1.13949696E-4	37.499996	1
TATAGCG	30	1.13949696E-4	37.499996	1
GACGAAT	30	1.13949696E-4	37.499996	20
CGATAAC	30	1.13949696E-4	37.499996	16
TAATCGG	30	1.13949696E-4	37.499996	2
GTTTTTT	7010	0.0	37.32881	2
GCGTTTA	25	0.0021065855	35.999996	32
ACTACGG	50	4.8745278E-8	35.999996	2