SRR3551605_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551605_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	744863
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7039	0.9450059943909149	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCG	6578	0.8831154185400536	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGC	6570	0.8820413955317957	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTC	5606	0.7526216230367195	No Hit
GCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTCTGC	2950	0.3960459842950985	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTACGAAGT	1463	0.19641195763516242	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCT	1415	0.18996781958561507	No Hit
GAACTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTCT	1341	0.18003310675922957	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTACGAAGTCGTA	1279	0.17170942844523088	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	1075	0.14432184173465457	No Hit
CTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTCTGCT	1060	0.142308048594171	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTC	1006	0.13505839328843022	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCC	877	0.11773977228027167	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	799	0.1072680479497572	No Hit

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGATCG	20	7.031686E-4	45.0	40
CGGCACA	20	7.031686E-4	45.0	9
CGCGTCA	20	7.031686E-4	45.0	39
CGATCGA	20	7.031686E-4	45.0	41
CGAATAT	105	0.0	42.857143	14
CGAAAGG	95	0.0	42.63158	2
CGTTTTT	2935	0.0	42.316868	1
TACGGCT	940	0.0	41.888298	7
ACACGAC	140	0.0	41.785717	26
AAACACG	135	0.0	41.666664	40
ACGGCTG	960	0.0	41.249996	8
TAGCGCG	55	6.002665E-11	40.909092	1
GTTAGCG	55	6.002665E-11	40.909092	1
GCTACGA	110	0.0	40.909092	10
CACGACG	45	1.9266736E-8	40.000004	26
CGTCATA	45	1.9266736E-8	40.000004	38
TCGACAA	40	3.4560435E-7	39.375	19
CTACGAA	115	0.0	39.130436	11
CGAGACA	150	0.0	39.0	22
CCGATGA	680	0.0	38.713234	18