SRR3551603_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551603_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	400269
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3695	0.9231291956159482	No Hit
GCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCGTCTTCTGC	1475	0.3685021822824151	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCGTCTTC	1290	0.32228326450462064	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCG	1240	0.3097916651052168	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGC	1222	0.30529468932143133	No Hit
CCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCGTCTTCTGC	858	0.21435584569377092	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCC	801	0.2001154223784505	No Hit
CTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCGTCTTCTGCT	778	0.1943692866547247	Illumina Single End Adapter 2 (95% over 21bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	765	0.19112147081087968	No Hit
TCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCGTCTTCTGC	576	0.14390322508113293	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	567	0.14165473718924024	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACAC	25	3.8862338E-5	45.000004	34
CCAATCG	25	3.8862338E-5	45.000004	24
CACAACG	25	3.8862338E-5	45.000004	12
CGCATCG	45	3.8380676E-10	45.0	21
GATTTGA	20	7.0277706E-4	45.0	9
TAACGAG	20	7.0277706E-4	45.0	1
TGTGCCG	20	7.0277706E-4	45.0	1
CGTAGAC	20	7.0277706E-4	45.0	19
ATGGTCG	45	3.8380676E-10	45.0	44
ACGTAGA	20	7.0277706E-4	45.0	18
CGCACGG	20	7.0277706E-4	45.0	2
ATAGTAG	20	7.0277706E-4	45.0	1
TCGGTTG	20	7.0277706E-4	45.0	17
AATACGG	20	7.0277706E-4	45.0	2
CCGCATC	45	3.8380676E-10	45.0	20
GTACGAG	40	6.7957444E-9	45.0	1
AACGAGC	30	2.1619435E-6	44.999996	15
TATCGCG	30	2.1619435E-6	44.999996	1
AGTCGTG	30	2.1619435E-6	44.999996	1
GCTACGA	115	0.0	43.04348	10