SRR3551602_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551602_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	428099
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCG	3795	0.8864771933594799	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTC	3698	0.8638188830153773	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGC	3629	0.8477011158633868	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2783	0.6500832751302853	No Hit
GCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTGC	1988	0.46437856663995947	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCT	832	0.1943475691370454	No Hit
CTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTGCT	764	0.17846339281334458	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCC	686	0.16024330820674657	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCGATTACGT	684	0.15977612655016712	No Hit
GAACTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCT	679	0.15860817240871855	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTC	612	0.14295758691330743	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCGATTACGTCGTA	565	0.13197881798369068	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	553	0.12917572804421407	No Hit
CCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTGC	518	0.12100004905407395	No Hit
TCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTGC	478	0.11165641592248522	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAACCGG	30	2.1622964E-6	45.000004	2
CCAACGG	35	1.209537E-7	45.000004	2
TCACGAC	45	3.8380676E-10	45.0	25
ACGTTAG	20	7.028322E-4	45.0	1
GGCGTAG	20	7.028322E-4	45.0	1
CCGTCGA	20	7.028322E-4	45.0	41
ACGATAG	20	7.028322E-4	45.0	1
CTTGCGG	20	7.028322E-4	45.0	2
GACGGTC	50	2.1827873E-11	45.0	29
CGTAAAT	20	7.028322E-4	45.0	33
CGGTCTA	45	3.8380676E-10	45.0	31
TATAACG	25	3.8866903E-5	45.0	1
ATCGCAT	25	3.8866903E-5	45.0	10
TCGAAAG	20	7.028322E-4	45.0	1
TGCGTAG	20	7.028322E-4	45.0	1
ACGGTCT	45	3.8380676E-10	45.0	30
CGAATAT	75	0.0	42.0	14
CGTTTTT	1465	0.0	40.85324	1
CTCACGT	40	3.4514414E-7	39.375	45
CGTTCAT	40	3.4514414E-7	39.375	17