SRR3551600_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551600_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	606394
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTGC	2938	0.4845034746386013	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2628	0.4333815967836094	No Hit
CTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTGCT	1128	0.18601767167880948	Illumina Single End Adapter 2 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTGC	957	0.1578181842168623	No Hit
CCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTGC	948	0.1563340006662335	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCC	923	0.15221126858115352	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	883	0.14561489724502552	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGC	697	0.11494177053203032	No Hit
GAATCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTC	687	0.11329267769799835	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCG	685	0.11296285913119193	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	637	0.10504721352783833	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGCTT	50	2.1827873E-11	45.0	31
ACGTGCG	25	3.8886174E-5	45.0	1
ACTACCG	20	7.030647E-4	45.0	1
TCGTAAG	25	3.8886174E-5	45.0	1
ATAACGC	25	3.8886174E-5	45.0	11
CGTAAGG	110	0.0	42.954544	2
CGAATAT	105	0.0	42.85714	14
TCGTGTA	65	0.0	41.53846	17
GCGTAAG	60	3.6379788E-12	41.250004	1
TATTAGT	160	0.0	40.78125	30
TATACTG	125	0.0	39.6	18
GATACGC	40	3.4546247E-7	39.375	11
GGCGATA	270	0.0	39.166668	8
CGTTTTT	1190	0.0	38.760506	1
TGCGTAG	35	6.2434083E-6	38.571426	1
GCATATT	170	0.0	38.382355	27
GTCCCCC	190	0.0	37.894737	9
GATTCAT	95	0.0	37.894737	45
GCCCCGT	30	1.1392856E-4	37.500004	22
AACTTCG	60	1.546141E-10	37.500004	11