##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551600_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 606394 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.0183362632216 33.0 31.0 34.0 30.0 34.0 2 32.09000089051013 33.0 31.0 34.0 30.0 34.0 3 32.06054149612298 33.0 31.0 34.0 30.0 34.0 4 35.709967446907456 37.0 35.0 37.0 33.0 37.0 5 35.76998947878772 37.0 35.0 37.0 35.0 37.0 6 35.660026319521634 37.0 35.0 37.0 33.0 37.0 7 35.97130413559501 37.0 35.0 37.0 35.0 37.0 8 35.78348235635577 37.0 35.0 37.0 35.0 37.0 9 37.5975586829685 39.0 37.0 39.0 35.0 39.0 10 37.212111267591695 39.0 37.0 39.0 34.0 39.0 11 37.33236311704931 39.0 37.0 39.0 34.0 39.0 12 37.281109311767594 39.0 37.0 39.0 34.0 39.0 13 37.34126656926025 39.0 37.0 39.0 34.0 39.0 14 38.38715422646003 40.0 38.0 41.0 34.0 41.0 15 38.48313967486486 40.0 38.0 41.0 34.0 41.0 16 38.250888036491126 40.0 37.0 41.0 34.0 41.0 17 38.28920470848986 40.0 37.0 41.0 34.0 41.0 18 38.0996860127244 40.0 37.0 41.0 34.0 41.0 19 37.93217610992193 40.0 37.0 41.0 34.0 41.0 20 38.22999567937678 40.0 37.0 41.0 34.0 41.0 21 38.089049363944895 40.0 37.0 41.0 34.0 41.0 22 38.250075033723945 40.0 37.0 41.0 34.0 41.0 23 38.2944158418454 40.0 37.0 41.0 34.0 41.0 24 38.16119222815529 40.0 37.0 41.0 34.0 41.0 25 37.77855651606051 40.0 36.0 41.0 33.0 41.0 26 38.00146109625095 40.0 37.0 41.0 34.0 41.0 27 38.08431646751122 40.0 37.0 41.0 34.0 41.0 28 38.00579491221879 40.0 37.0 41.0 34.0 41.0 29 38.04122896994363 40.0 37.0 41.0 34.0 41.0 30 37.737601295527334 40.0 36.0 41.0 33.0 41.0 31 37.666850265668856 40.0 36.0 41.0 33.0 41.0 32 37.70705349986972 40.0 36.0 41.0 33.0 41.0 33 37.676472722355435 40.0 36.0 41.0 33.0 41.0 34 37.60978175905434 40.0 36.0 41.0 33.0 41.0 35 37.5642008331217 40.0 36.0 41.0 33.0 41.0 36 37.40191030913894 40.0 36.0 41.0 33.0 41.0 37 37.43414512676576 40.0 36.0 41.0 33.0 41.0 38 37.262359126244654 39.0 35.0 41.0 33.0 41.0 39 37.21466076511311 39.0 35.0 41.0 33.0 41.0 40 37.1591621948766 39.0 35.0 41.0 33.0 41.0 41 36.986894659247945 39.0 35.0 41.0 32.0 41.0 42 37.05184253142346 39.0 35.0 41.0 33.0 41.0 43 37.03754984383091 39.0 35.0 41.0 33.0 41.0 44 37.07092253551321 39.0 35.0 41.0 33.0 41.0 45 37.03701553775268 39.0 35.0 41.0 33.0 41.0 46 36.94150502808405 39.0 35.0 41.0 33.0 41.0 47 36.91379861937948 39.0 35.0 41.0 32.0 41.0 48 36.856339277763304 39.0 35.0 41.0 32.0 41.0 49 36.820140040963466 39.0 35.0 41.0 32.0 41.0 50 36.72318492597222 39.0 35.0 41.0 32.0 41.0 51 35.877617522600815 38.0 35.0 40.0 30.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 7.0 9 21.0 10 20.0 11 18.0 12 31.0 13 32.0 14 33.0 15 55.0 16 54.0 17 78.0 18 152.0 19 232.0 20 378.0 21 549.0 22 839.0 23 1200.0 24 1827.0 25 2755.0 26 3928.0 27 4934.0 28 5490.0 29 6173.0 30 7291.0 31 9194.0 32 12371.0 33 17806.0 34 34089.0 35 46080.0 36 46635.0 37 73605.0 38 136135.0 39 194282.0 40 98.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.80881077319367 20.58793457718909 23.84142982945082 11.761824820166426 2 33.210420947436816 24.46726055996596 24.896684333947896 17.425634158649327 3 32.77324643713494 23.72286005468392 26.75521195790196 16.74868155027919 4 29.54267357526625 25.00931737451228 26.05401768487155 19.393991365349923 5 25.334683390666797 29.056191189226805 24.533224273327242 21.07590114677916 6 26.328756551021282 34.48220134104229 24.00271110861915 15.186330999317278 7 77.96218300312998 6.741491505522812 10.297430383546011 4.998895107801198 8 78.33388852792079 6.038813048941777 9.64389489341913 5.983403529718302 9 71.91347539718402 7.674548231018117 12.277001421518023 8.134974950279851 10 37.3789978133029 25.30516462893762 20.03664284277219 17.279194714987288 11 29.199002628653975 24.915154173689054 25.21331015808204 20.67253303957493 12 26.533738790291462 21.777919966226577 30.651523596869364 21.036817646612597 13 24.1753711283423 24.284046346105008 31.813144589161503 19.72743793639119 14 20.660659571169898 27.92623277934808 29.532779018262055 21.880328631219967 15 19.686210615540393 25.104634940319333 33.700201519144315 21.50895292499596 16 21.42039663980844 23.789813223745618 31.620200727579757 23.16958940886618 17 21.26422754842561 24.406903762240393 28.964501627654627 25.36436706167937 18 22.77562113081594 24.245787392355464 30.034927786224795 22.9436636906038 19 24.362708074288335 25.42967113790704 27.567719997229524 22.639900790575105 20 24.848530823194164 25.540325267070585 27.997803408345067 21.613340501390184 21 24.50782824368315 26.33667219662464 28.01775743163686 21.137742128055358 22 22.031550444100702 24.68708463474243 27.06969396135186 26.211670959805012 23 21.438536660982795 26.191881845796626 28.49335580497169 23.876225688248894 24 22.614669670214415 25.33946575988549 28.964336718371225 23.081527851528875 25 22.42881690781901 26.174566371039294 27.94173425198798 23.454882469153716 26 20.89153256793438 26.20969204840417 27.32332443922598 25.575450944435467 27 23.167115769615133 25.75025478484286 28.273861548762024 22.80876789677998 28 21.111191733427443 25.54444799915567 29.203784997872674 24.14057526954422 29 21.593221568814993 25.347711224055647 28.363902017500177 24.695165189629183 30 22.63660260490704 26.68792897027345 27.558485077358945 23.11698334746056 31 24.525803355574098 26.901651401563996 24.395854840252376 24.176690402609523 32 23.17140341098362 26.987239319650257 26.20721840915313 23.634138860212996 33 22.507148817435528 26.969923844892925 25.933139180137005 24.58978815753454 34 21.69299168527393 25.087979102695606 27.193375923904263 26.0256532881262 35 22.389073770518838 24.688898636859864 27.230150694103173 25.691876898518125 36 23.006329218297015 27.015933534962418 26.714974092751575 23.262763153988992 37 22.373407388595535 27.031435007602315 27.821680293670454 22.773477310131696 38 22.734228900681735 27.510001748038405 26.649999835090714 23.105769516189145 39 22.079374136287626 25.106613851720166 28.472082507412672 24.341929504579532 40 22.95438279402501 23.5775749760057 29.451313832260873 24.01672839770842 41 21.119272288314196 24.95473240170582 27.27731474915649 26.64868056082349 42 22.75104964758886 25.08616510057817 28.310801228244344 23.851984023588624 43 22.808273168929773 24.292621628841975 29.46714512346758 23.431960078760675 44 22.886110350696082 23.809932156320805 28.27963337368114 25.024324119301973 45 22.575751079331262 24.056141716441783 27.257525635148106 26.11058156907885 46 23.323119951714563 25.19319122550685 27.694700145449985 23.7889886773286 47 21.608228313604684 25.10710857957038 29.50886717216859 23.775795934656347 48 21.53929623314215 24.53256463619363 29.273706534035625 24.654432596628595 49 22.027757530582427 22.970214085231714 30.997503273449272 24.004525110736584 50 21.000537604263894 22.809427533913595 30.68796854850147 25.50206631332104 51 21.343713823025954 22.783206957852485 27.484275899827505 28.388803319294055 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 261.0 1 655.0 2 1049.0 3 2662.5 4 4276.0 5 2909.0 6 1542.0 7 1519.0 8 1496.0 9 1480.5 10 1465.0 11 1456.0 12 1447.0 13 1434.0 14 1421.0 15 1411.0 16 1401.0 17 1334.0 18 1267.0 19 1340.5 20 1414.0 21 1577.0 22 1740.0 23 1851.5 24 1963.0 25 2541.0 26 3942.0 27 4765.0 28 5366.0 29 5967.0 30 6818.5 31 7670.0 32 9287.5 33 10905.0 34 12215.0 35 13525.0 36 13888.5 37 14252.0 38 16172.0 39 18092.0 40 20505.0 41 22918.0 42 26587.5 43 30257.0 44 34348.5 45 38440.0 46 46430.5 47 54421.0 48 60509.5 49 66598.0 50 64863.5 51 63129.0 52 54593.0 53 46057.0 54 41180.0 55 36303.0 56 33552.5 57 30802.0 58 28951.5 59 27101.0 60 25655.5 61 24210.0 62 22403.0 63 20596.0 64 17771.5 65 14947.0 66 12758.0 67 10569.0 68 8776.0 69 6983.0 70 6292.5 71 5602.0 72 4614.5 73 3627.0 74 2905.0 75 1627.5 76 1072.0 77 896.5 78 721.0 79 607.5 80 494.0 81 371.0 82 248.0 83 151.5 84 55.0 85 32.0 86 9.0 87 11.0 88 13.0 89 6.5 90 0.0 91 1.0 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 606394.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.13497488134248 #Duplication Level Percentage of deduplicated Percentage of total 1 72.34183719110938 21.800194466242477 2 10.333268855188017 6.227855947864989 3 3.7279030774386 3.3702079679607464 4 1.881036898110094 2.267399987017042 5 1.2224082678906356 1.8418621223814837 6 0.8904144320588756 1.609956992644743 7 0.68043756293328 1.4353478207121397 8 0.5888353385623691 1.4195630509459032 9 0.5136623092479453 1.3931280708011282 >10 7.613016925877014 49.62647562541226 >50 0.13279301362153134 2.660060595893757 >100 0.06612100263312592 3.7981414525888 >500 0.006612100263312592 1.438292439552513 >1k 0.001653025065828148 1.1115134599820506 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTGC 2938 0.4845034746386013 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2628 0.4333815967836094 No Hit CTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTGCT 1128 0.18601767167880948 Illumina Single End Adapter 2 (95% over 21bp) TCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTGC 957 0.1578181842168623 No Hit CCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTGC 948 0.1563340006662335 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCC 923 0.15221126858115352 No Hit CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA 883 0.14561489724502552 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGC 697 0.11494177053203032 No Hit GAATCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTC 687 0.11329267769799835 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCG 685 0.11296285913119193 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 637 0.10504721352783833 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.947278502095997E-4 0.0 0.0 0.1934385894319535 0.0 2 4.947278502095997E-4 0.0 0.0 1.1141271186720185 0.0 3 4.947278502095997E-4 0.0 0.0 1.4942430169163943 0.0 4 4.947278502095997E-4 0.0 0.0 2.097646084888703 0.0 5 4.947278502095997E-4 0.0 0.0 3.7546545645240554 0.0 6 4.947278502095997E-4 0.0 0.0 4.707170585460938 0.0 7 6.596371336127996E-4 0.0 0.0 5.603782359324136 0.0 8 6.596371336127996E-4 0.0 0.0 7.070320616628792 0.0 9 6.596371336127996E-4 0.0 0.0 7.657232756260781 0.0 10 6.596371336127996E-4 0.0 0.0 9.0136116122521 0.0 11 6.596371336127996E-4 0.0 0.0 10.67870064677421 0.0 12 6.596371336127996E-4 0.0 0.0 11.9923679983641 0.0 13 6.596371336127996E-4 0.0 0.0 12.494022038476635 0.0 14 6.596371336127996E-4 0.0 0.0 12.688120265042201 0.0 15 6.596371336127996E-4 0.0 0.0 13.108474028436957 0.0 16 6.596371336127996E-4 0.0 0.0 13.914880424278603 0.0 17 6.596371336127996E-4 0.0 0.0 14.9041712154144 0.0 18 6.596371336127996E-4 0.0 0.0 16.04006635949564 0.0 19 6.596371336127996E-4 0.0 0.0 16.664907634310367 0.0 20 6.596371336127996E-4 0.0 0.0 17.25511795961042 0.0 21 6.596371336127996E-4 0.0 0.0 17.92250582954317 0.0 22 6.596371336127996E-4 0.0 0.0 18.637717391662846 0.0 23 6.596371336127996E-4 0.0 0.0 19.34550803602938 0.0 24 6.596371336127996E-4 0.0 0.0 19.903561051065807 0.0 25 6.596371336127996E-4 0.0 0.0 20.41956219883442 0.0 26 6.596371336127996E-4 0.0 0.0 20.868280358974527 0.0 27 6.596371336127996E-4 0.0 0.0 21.329531624653278 0.0 28 6.596371336127996E-4 0.0 0.0 21.8151894642757 0.0 29 6.596371336127996E-4 0.0 0.0 22.273142544286387 0.0 30 6.596371336127996E-4 0.0 0.0 22.79590497267453 0.0 31 6.596371336127996E-4 0.0 0.0 23.280903175163342 0.0 32 6.596371336127996E-4 0.0 0.0 23.77084865615425 0.0 33 6.596371336127996E-4 0.0 0.0 24.241664660270384 0.0 34 6.596371336127996E-4 0.0 0.0 24.72072612855668 0.0 35 8.245464170159995E-4 0.0 0.0 25.218752164434346 0.0 36 8.245464170159995E-4 0.0 0.0 25.662523046072355 0.0 37 8.245464170159995E-4 0.0 0.0 26.117177940414976 0.0 38 8.245464170159995E-4 0.0 0.0 26.553527904299845 0.0 39 8.245464170159995E-4 0.0 0.0 26.999937334472307 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACGCTT 50 2.1827873E-11 45.0 31 ACGTGCG 25 3.8886174E-5 45.0 1 ACTACCG 20 7.030647E-4 45.0 1 TCGTAAG 25 3.8886174E-5 45.0 1 ATAACGC 25 3.8886174E-5 45.0 11 CGTAAGG 110 0.0 42.954544 2 CGAATAT 105 0.0 42.85714 14 TCGTGTA 65 0.0 41.53846 17 GCGTAAG 60 3.6379788E-12 41.250004 1 TATTAGT 160 0.0 40.78125 30 TATACTG 125 0.0 39.6 18 GATACGC 40 3.4546247E-7 39.375 11 GGCGATA 270 0.0 39.166668 8 CGTTTTT 1190 0.0 38.760506 1 TGCGTAG 35 6.2434083E-6 38.571426 1 GCATATT 170 0.0 38.382355 27 GTCCCCC 190 0.0 37.894737 9 GATTCAT 95 0.0 37.894737 45 GCCCCGT 30 1.1392856E-4 37.500004 22 AACTTCG 60 1.546141E-10 37.500004 11 >>END_MODULE