SRR3551599_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551599_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	388368
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCCTCTAGATCGTATGCCGTCTTCTGC	2989	0.7696308655707988	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2352	0.6056111729081696	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCTCTAGATCGTATGCCGTCTTC	1777	0.45755572034771147	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCTCTAGATCGTATGC	1746	0.44957360029662585	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCTCTAGATCGTATGCCG	1742	0.44854364932229224	No Hit
CTGTCTCTTATACACATCTGACGCCCTCTAGATCGTATGCCGTCTTCTGCT	1209	0.3113026819923371	Illumina Single End Adapter 1 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCCCTCTAGATCGTATGCCGTCTTCTGC	1096	0.2822065669674123	Illumina Single End Adapter 1 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCCCTCTAGATCGTATGCCGTCTTCTGC	967	0.24899064804515306	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCCTCTAGATCGTATGCC	780	0.20084043999505624	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	531	0.13672599184278827	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	509	0.13106126148395336	No Hit
ACTGTCTCTTATACACATCTGACGCCCTCTAGATCGTATGCCGTCTTCTGC	501	0.12900135953528613	Illumina Single End Adapter 1 (95% over 21bp)
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	438	0.11277963168953156	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCCTCTAGATCGTATGCCGTCT	425	0.10943229102294731	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAGAAT	35	1.209155E-7	45.0	41
CTCACGA	35	1.209155E-7	45.0	24
GCGACGT	35	1.209155E-7	45.0	17
TCACCGC	20	7.0275116E-4	45.0	19
ACCGCCA	20	7.0275116E-4	45.0	21
CGGTTGC	20	7.0275116E-4	45.0	36
CGCATCG	20	7.0275116E-4	45.0	21
GCAGTAA	20	7.0275116E-4	45.0	1
AATTGCG	20	7.0275116E-4	45.0	1
TCGCTAT	35	1.209155E-7	45.0	23
TCATGCG	20	7.0275116E-4	45.0	1
CGCAGTA	20	7.0275116E-4	45.0	13
GCGATCA	50	2.1827873E-11	45.0	9
ATGAACG	35	1.209155E-7	45.0	28
TTTGACG	20	7.0275116E-4	45.0	1
CCTATGC	80	0.0	45.0	35
TTCGCCC	20	7.0275116E-4	45.0	27
TATCGCG	20	7.0275116E-4	45.0	1
CTAGCGG	25	3.8860195E-5	45.0	2
ACGGTAG	25	3.8860195E-5	45.0	1