SRR3551597_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551597_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	459844
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2926	0.6363027461486939	No Hit
GCTGTCTCTTATACACATCTGACGCCCACTTTGTCGTATGCCGTCTTCTGC	1917	0.41688050730247656	TruSeq Adapter, Index 27 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCCCACTTTGTCGTATGCCGTCTTCTGCT	844	0.18354050504083994	TruSeq Adapter, Index 20 (95% over 22bp)
GAATCTGTCTCTTATACACATCTGACGCCCACTTTGTCGTATGCCGTCTTC	822	0.1787562738667896	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCCACTTTGTCGTATGCC	804	0.17484190290620297	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCACTTTGTCGTATGC	800	0.17397204269273928	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCACTTTGTCGTATGCCG	785	0.17071006689225043	No Hit
CCTGTCTCTTATACACATCTGACGCCCACTTTGTCGTATGCCGTCTTCTGC	694	0.15092074703595132	TruSeq Adapter, Index 27 (95% over 23bp)
TCTGTCTCTTATACACATCTGACGCCCACTTTGTCGTATGCCGTCTTCTGC	675	0.14678891102199876	TruSeq Adapter, Index 27 (95% over 23bp)
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	513	0.11155957237671905	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGAATG	35	1.2098099E-7	45.000004	1
AGGGCGC	70	0.0	45.000004	6
ACGTTAG	25	3.8871425E-5	45.0	1
TAAACGC	20	7.028868E-4	45.0	35
CTAACGG	20	7.028868E-4	45.0	2
AATTGCG	20	7.028868E-4	45.0	1
ACTCGTT	20	7.028868E-4	45.0	18
TCCCGCG	25	3.8871425E-5	45.0	16
ACCCGGT	20	7.028868E-4	45.0	10
CGTTTTT	1385	0.0	42.56318	1
GGCCGAT	115	0.0	41.08696	8
GGGCGTC	55	6.002665E-11	40.909092	7
TCAAGCG	45	1.9239451E-8	40.0	17
GTACGAG	45	1.9239451E-8	40.0	1
GCGTCCC	80	0.0	39.375	7
GCGTAAG	40	3.4521872E-7	39.375	1
CTCACGT	35	6.240114E-6	38.57143	45
TTACTAG	35	6.240114E-6	38.57143	1
ATTGCGG	70	0.0	38.57143	2
CATATTA	95	0.0	37.894737	28