##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551597_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 459844 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.976785605553186 33.0 31.0 34.0 30.0 34.0 2 32.05633432207444 33.0 31.0 34.0 30.0 34.0 3 32.00913135759083 33.0 31.0 34.0 30.0 34.0 4 35.68355572759457 37.0 35.0 37.0 33.0 37.0 5 35.74780577761154 37.0 35.0 37.0 35.0 37.0 6 35.625616513426294 37.0 35.0 37.0 33.0 37.0 7 35.977770722244934 37.0 35.0 37.0 35.0 37.0 8 35.81778168248363 37.0 35.0 37.0 35.0 37.0 9 37.66310748862658 39.0 38.0 39.0 35.0 39.0 10 37.20896434442985 39.0 37.0 39.0 34.0 39.0 11 37.25505823714129 39.0 37.0 39.0 34.0 39.0 12 37.243913153156285 39.0 37.0 39.0 34.0 39.0 13 37.34511269039066 39.0 37.0 39.0 34.0 39.0 14 38.39238959299241 40.0 38.0 41.0 34.0 41.0 15 38.485932185697756 40.0 38.0 41.0 34.0 41.0 16 38.25275093292508 40.0 38.0 41.0 34.0 41.0 17 38.27757239411626 40.0 37.0 41.0 34.0 41.0 18 38.074497003331565 40.0 37.0 41.0 34.0 41.0 19 37.89798061951444 39.0 37.0 41.0 33.0 41.0 20 38.201516166352064 40.0 37.0 41.0 34.0 41.0 21 38.056556136428874 40.0 37.0 41.0 34.0 41.0 22 38.23327693739616 40.0 37.0 41.0 34.0 41.0 23 38.287741060011655 40.0 37.0 41.0 34.0 41.0 24 38.15099251050356 40.0 37.0 41.0 34.0 41.0 25 37.77349492436566 40.0 36.0 41.0 33.0 41.0 26 38.00185062760414 40.0 37.0 41.0 34.0 41.0 27 38.10928053861745 40.0 37.0 41.0 34.0 41.0 28 38.00516914431851 40.0 37.0 41.0 34.0 41.0 29 38.06562007985317 40.0 37.0 41.0 34.0 41.0 30 37.77689390314976 40.0 36.0 41.0 33.0 41.0 31 37.69398317690347 40.0 36.0 41.0 33.0 41.0 32 37.7615517436348 40.0 37.0 41.0 33.0 41.0 33 37.73824383921504 40.0 37.0 41.0 33.0 41.0 34 37.628595784657406 40.0 37.0 41.0 33.0 41.0 35 37.61413870790964 40.0 37.0 41.0 33.0 41.0 36 37.44309157018467 40.0 36.0 41.0 33.0 41.0 37 37.47471968754621 40.0 36.0 41.0 33.0 41.0 38 37.311916649994345 40.0 36.0 41.0 33.0 41.0 39 37.26705143483442 40.0 36.0 41.0 33.0 41.0 40 37.21432485799532 40.0 36.0 41.0 32.0 41.0 41 37.0640782526248 39.0 35.0 41.0 32.0 41.0 42 37.12064526230635 40.0 35.0 41.0 32.0 41.0 43 37.10450718069606 40.0 35.0 41.0 32.0 41.0 44 37.14101738850567 40.0 35.0 41.0 33.0 41.0 45 37.12882847226451 40.0 35.0 41.0 33.0 41.0 46 37.04942110802794 39.0 35.0 41.0 32.0 41.0 47 37.01099503309818 39.0 35.0 41.0 32.0 41.0 48 36.95608945642435 39.0 35.0 41.0 32.0 41.0 49 36.92793425596506 39.0 35.0 41.0 32.0 41.0 50 36.8095810753212 39.0 35.0 41.0 32.0 41.0 51 35.983394368524976 38.0 35.0 40.0 30.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 7.0 9 16.0 10 18.0 11 13.0 12 13.0 13 24.0 14 19.0 15 24.0 16 43.0 17 65.0 18 97.0 19 186.0 20 301.0 21 531.0 22 761.0 23 1145.0 24 1746.0 25 2618.0 26 3430.0 27 4051.0 28 4217.0 29 4754.0 30 5460.0 31 7037.0 32 9356.0 33 13156.0 34 23734.0 35 31715.0 36 33467.0 37 51473.0 38 102320.0 39 157998.0 40 49.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.49428936769861 21.434877915119042 25.133523542766678 11.93730917441567 2 32.91833752316003 24.519402232061307 25.914223084350347 16.64803716042832 3 31.65899739911796 23.694557284644358 28.517497238193823 16.12894807804386 4 28.524891050008268 25.383825819190857 27.895112255460546 18.196170875340336 5 25.44776054488044 29.386052661337324 25.849635963500667 19.316550830281574 6 26.257817868668504 34.401014257008896 24.550282269639272 14.790885604683327 7 79.56002470403007 5.508824731865589 10.424187333095572 4.506963231008776 8 80.21307225928793 5.143265977157471 9.41862892633154 5.225032837223059 9 73.54211428223485 7.8711476065796235 11.796174354781188 6.790563756404346 10 35.411139429893616 31.69139969206948 18.630883517018816 14.266577361018085 11 26.492897591357067 25.207026730804362 29.000487121719537 19.299588556119033 12 25.106992806256034 22.225363384104174 32.463835561625245 20.203808248014543 13 23.95094858256278 24.158845173580605 33.462217621628206 18.42798862222841 14 20.904698115012916 28.059515835805186 30.446629726602936 20.589156322578962 15 19.221083671853933 26.878245665921487 33.92715790572455 19.973512756500032 16 21.323753272849054 24.77905550578022 32.93225528657545 20.964935934795278 17 21.39051504423239 25.470159445377128 29.849253225006738 23.29007228538374 18 21.596889379876654 25.41818529762267 31.071189359869866 21.913735962630806 19 22.164038239054985 27.192047737928515 29.084428632318787 21.559485390697713 20 23.428380059324468 26.770600464505357 29.34886613721175 20.45215333895843 21 22.478710171275477 27.809213559381007 29.850775480380303 19.861300788963213 22 20.985595114865042 25.454067031428053 28.640147528292204 24.92019032541471 23 20.12769547933647 27.88206435225859 29.184897486973842 22.805342681431092 24 21.27960786701577 26.051660998077608 30.363340611163785 22.305390523742837 25 20.205330503388105 27.769852384721776 28.268064821983106 23.756752289907013 26 19.615782743713087 28.19695374953245 28.840215377388855 23.34704812936561 27 21.738024199511138 26.97349535929576 28.59621958751229 22.692260853680814 28 19.502918381016173 27.137898939640397 29.85642957176782 23.502753107575614 29 19.963509364045198 25.16701316098503 28.899148406851015 25.97032906811875 30 21.20914918972521 25.745687667991753 29.04615478292638 23.99900835935665 31 20.81662476839972 28.145414531884725 26.76690355859813 24.27105714111742 32 20.842938039856996 27.32535381564183 26.91369246962013 24.918015674881048 33 21.16543871399866 25.66848757404685 28.23327041344456 24.932803298509928 34 19.428110402658294 26.154304503266324 30.23873313558511 24.17885195849027 35 19.680804794669495 24.126225415575718 29.61134645662442 26.581623333130366 36 21.23415767086229 26.102547820565235 28.837823261801827 23.825471246770643 37 20.162272422821655 26.771252859665452 30.0480162837832 23.0184584337297 38 19.9041414044763 27.315350423186995 28.933725350336204 23.846782822000502 39 21.952227277076574 24.017057958786022 30.208070563060517 23.822644201076887 40 21.61624376962622 23.523194822592007 32.57996190012265 22.28059950765912 41 20.142918033072085 24.963465871034522 30.094988735310235 24.798627360583154 42 21.24611824879742 25.726985673402286 29.374961943615663 23.65193413418464 43 22.16577795948191 25.081984325118956 28.437470098555163 24.314767616843973 44 20.753994833030333 25.65739685632519 28.808682944650794 24.779925365993684 45 20.92644462034951 23.867007071963535 28.714738041596714 26.491810266090237 46 22.327137029079427 24.87843703516845 29.424761440836456 23.369664494915668 47 19.6801523995094 25.526917824305634 31.48045859030454 23.31247118588043 48 20.504127486712886 24.515705326154087 29.606997155557103 25.373170031575924 49 20.940362383764928 23.470350814624087 31.456102504327554 24.133184297283428 50 19.84390358469394 23.024112525117214 31.26799523316603 25.86398865702282 51 19.84325118953384 23.292464400970765 29.22512852184654 27.639155887648855 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 173.0 1 394.0 2 615.0 3 2480.5 4 4346.0 5 2839.0 6 1332.0 7 1326.5 8 1321.0 9 1302.5 10 1284.0 11 1330.0 12 1376.0 13 1362.0 14 1348.0 15 1316.0 16 1284.0 17 1262.5 18 1241.0 19 1280.0 20 1319.0 21 1516.5 22 1714.0 23 1738.0 24 1762.0 25 2294.0 26 3408.0 27 3990.0 28 4797.0 29 5604.0 30 6208.0 31 6812.0 32 8218.0 33 9624.0 34 10847.0 35 12070.0 36 13374.0 37 14678.0 38 15774.0 39 16870.0 40 19024.0 41 21178.0 42 23566.0 43 25954.0 44 28955.0 45 31956.0 46 38493.5 47 45031.0 48 48598.5 49 52166.0 50 50181.0 51 48196.0 52 41471.5 53 34747.0 54 30265.0 55 25783.0 56 22901.5 57 20020.0 58 18084.0 59 16148.0 60 15315.5 61 14483.0 62 12820.0 63 11157.0 64 9387.5 65 7618.0 66 6125.0 67 4632.0 68 3930.0 69 3228.0 70 2819.5 71 2411.0 72 2025.5 73 1640.0 74 1302.0 75 692.5 76 421.0 77 357.0 78 293.0 79 219.0 80 145.0 81 104.0 82 63.0 83 37.5 84 12.0 85 7.5 86 3.0 87 3.0 88 3.0 89 2.0 90 1.0 91 1.0 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 459844.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.05241210467533 #Duplication Level Percentage of deduplicated Percentage of total 1 73.73645692939175 28.058500462158577 2 9.322555809499772 7.094914710638407 3 3.621409272968975 4.134100741641243 4 2.095580942240983 3.1896763845143083 5 1.4835705600188158 2.8226719168099965 6 1.2186254204313558 2.7822982019692306 7 0.9813262752383145 2.6139282284160075 8 0.8116655330048695 2.47086650824498 9 0.6928361304416238 2.372767736091593 >10 5.931416457608134 38.219941547171274 >50 0.06147012966831525 1.6098163088735469 >100 0.037341667555518564 2.2739420484658637 >500 0.004595897545294592 1.2978652126265942 >1k 0.001148974386323648 1.0587099923784058 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2926 0.6363027461486939 No Hit GCTGTCTCTTATACACATCTGACGCCCACTTTGTCGTATGCCGTCTTCTGC 1917 0.41688050730247656 TruSeq Adapter, Index 27 (95% over 23bp) CTGTCTCTTATACACATCTGACGCCCACTTTGTCGTATGCCGTCTTCTGCT 844 0.18354050504083994 TruSeq Adapter, Index 20 (95% over 22bp) GAATCTGTCTCTTATACACATCTGACGCCCACTTTGTCGTATGCCGTCTTC 822 0.1787562738667896 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCCACTTTGTCGTATGCC 804 0.17484190290620297 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCCACTTTGTCGTATGC 800 0.17397204269273928 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCCACTTTGTCGTATGCCG 785 0.17071006689225043 No Hit CCTGTCTCTTATACACATCTGACGCCCACTTTGTCGTATGCCGTCTTCTGC 694 0.15092074703595132 TruSeq Adapter, Index 27 (95% over 23bp) TCTGTCTCTTATACACATCTGACGCCCACTTTGTCGTATGCCGTCTTCTGC 675 0.14678891102199876 TruSeq Adapter, Index 27 (95% over 23bp) CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA 513 0.11155957237671905 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.19049938674854952 0.0 2 0.0 0.0 0.0 1.0131696836318405 0.0 3 0.0 0.0 0.0 1.406563965170797 0.0 4 0.0 0.0 0.0 2.008289767834309 0.0 5 0.0 0.0 0.0 3.7260462243717436 0.0 6 0.0 0.0 0.0 4.82424474386966 0.0 7 0.0 0.0 0.0 5.817407642591835 0.0 8 0.0 0.0 0.0 7.44926540304973 0.0 9 0.0 0.0 0.0 8.1610285227164 0.0 10 0.0 0.0 0.0 9.646532302259027 0.0 11 0.0 0.0 0.0 11.322535468550203 0.0 12 0.0 0.0 0.0 12.744974382616714 0.0 13 0.0 0.0 0.0 13.272979532189177 0.0 14 0.0 0.0 0.0 13.486965144701246 0.0 15 0.0 0.0 0.0 13.879272100973374 0.0 16 0.0 0.0 0.0 14.631048790459372 0.0 17 0.0 0.0 0.0 15.63269282626282 0.0 18 0.0 0.0 0.0 16.712624281278 0.0 19 0.0 0.0 0.0 17.35175407312045 0.0 20 0.0 0.0 0.0 17.927166604326686 0.0 21 0.0 0.0 0.0 18.63110098207218 0.0 22 0.0 0.0 0.0 19.333948034550847 0.0 23 0.0 0.0 0.0 20.05353989613869 0.0 24 0.0 0.0 0.0 20.645479771400737 0.0 25 0.0 0.0 0.0 21.14151755812841 0.0 26 0.0 0.0 0.0 21.596889379876654 0.0 27 0.0 0.0 0.0 22.07726968276198 0.0 28 0.0 0.0 0.0 22.546124337818913 0.0 29 0.0 0.0 0.0 23.059124398709127 0.0 30 0.0 0.0 0.0 23.589739128921984 0.0 31 0.0 0.0 0.0 24.112525117213664 0.0 32 0.0 0.0 0.0 24.587251328711478 0.0 33 0.0 0.0 0.0 25.072198397717486 0.0 34 0.0 0.0 0.0 25.52496063882534 0.0 35 0.0 0.0 0.0 26.026435051887162 0.0 36 0.0 0.0 0.0 26.501596193491707 0.0 37 0.0 0.0 0.0 26.977192265202984 0.0 38 0.0 0.0 0.0 27.440175363819034 0.0 39 0.0 0.0 0.0 27.912944389836554 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGAATG 35 1.2098099E-7 45.000004 1 AGGGCGC 70 0.0 45.000004 6 ACGTTAG 25 3.8871425E-5 45.0 1 TAAACGC 20 7.028868E-4 45.0 35 CTAACGG 20 7.028868E-4 45.0 2 AATTGCG 20 7.028868E-4 45.0 1 ACTCGTT 20 7.028868E-4 45.0 18 TCCCGCG 25 3.8871425E-5 45.0 16 ACCCGGT 20 7.028868E-4 45.0 10 CGTTTTT 1385 0.0 42.56318 1 GGCCGAT 115 0.0 41.08696 8 GGGCGTC 55 6.002665E-11 40.909092 7 TCAAGCG 45 1.9239451E-8 40.0 17 GTACGAG 45 1.9239451E-8 40.0 1 GCGTCCC 80 0.0 39.375 7 GCGTAAG 40 3.4521872E-7 39.375 1 CTCACGT 35 6.240114E-6 38.57143 45 TTACTAG 35 6.240114E-6 38.57143 1 ATTGCGG 70 0.0 38.57143 2 CATATTA 95 0.0 37.894737 28 >>END_MODULE