SRR3551596_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551596_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	424688
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCG	4298	1.0120370719210336	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGC	4016	0.9456353840937346	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTC	3435	0.8088290698112497	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2506	0.5900802471461403	No Hit
GCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGC	1664	0.3918170515766869	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTGTCAGGT	1039	0.24465019025731832	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCT	860	0.20250160117545116	No Hit
CCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGC	826	0.1944957239196775	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTA	731	0.17212636099913348	No Hit
GAACTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCT	627	0.14763779527559054	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCC	566	0.13327430961082018	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTC	563	0.1325679086764872	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	494	0.1163206871868289	No Hit
CTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGCT	490	0.11537881927438495	Illumina Single End Adapter 1 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTCA	30	2.1622564E-6	45.000004	16
TTCACGG	30	2.1622564E-6	45.000004	2
CGTTCAT	30	2.1622564E-6	45.000004	17
CCGGTAT	30	2.1622564E-6	45.000004	42
CGGTATT	30	2.1622564E-6	45.000004	43
TCGTTTA	35	1.2095006E-7	45.0	38
CGCATCG	35	1.2095006E-7	45.0	21
GTTAACG	20	7.028258E-4	45.0	1
CCGCGTA	20	7.028258E-4	45.0	40
CGGTCGA	40	6.7975634E-9	45.0	41
ATCGCAT	20	7.028258E-4	45.0	10
AATGGGC	110	0.0	42.954544	4
ACGGGAC	70	0.0	41.785713	5
GTCGAAT	50	1.0786607E-9	40.5	43
GCTACGA	50	1.0786607E-9	40.5	10
CCGATGA	395	0.0	40.44304	18
TACGGCT	415	0.0	40.12048	7
GGTCGAA	45	1.9233994E-8	40.000004	42
TAACGCC	45	1.9233994E-8	40.000004	12
CGAATGC	45	1.9233994E-8	40.000004	45