SRR3551593_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551593_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	684798
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5425	0.7922044164848612	No Hit
GCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTCTGC	2613	0.38157237608754696	TruSeq Adapter, Index 20 (95% over 23bp)
GAATCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTC	2414	0.35251271177777976	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCG	2058	0.30052657864070864	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGC	2003	0.2924950131279589	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCC	1088	0.1588789686885768	No Hit
CTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTCTGCT	979	0.14296186612694547	TruSeq Adapter, Index 22 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTCTGC	784	0.1144863156726509	TruSeq Adapter, Index 20 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGTCTA	65	0.0	45.000004	31
CTATGCG	25	3.889148E-5	45.0	1
ATTAACG	20	7.031287E-4	45.0	1
CCTCGCG	25	3.889148E-5	45.0	40
TCGTCGG	20	7.031287E-4	45.0	33
AATAGCG	20	7.031287E-4	45.0	1
TATCGCG	25	3.889148E-5	45.0	1
GTACGAT	25	3.889148E-5	45.0	26
AATACGG	30	2.1642118E-6	44.999996	2
CGTTTTT	2375	0.0	42.063156	1
ACGGGTC	50	1.0804797E-9	40.5	5
CTACGAA	100	0.0	40.5	11
GGCGATA	195	0.0	40.384617	8
TAGCGCG	45	1.9263098E-8	40.0	1
TACGTAG	40	3.4554978E-7	39.375	1
ACATACG	120	0.0	39.374996	17
TAAGCGG	110	0.0	38.86364	2
TCGGACC	35	6.2445906E-6	38.571426	28
GCGATAT	35	6.2445906E-6	38.571426	9
CCGCCTA	35	6.2445906E-6	38.571426	29