SRR3551591_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551591_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	602058
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2458	0.40826631321234835	No Hit
GCTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCGTCTTCTGC	1182	0.19632659976281355	Illumina PCR Primer Index 11 (95% over 24bp)
CCTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCGTCTTCTGC	862	0.14317557444631582	Illumina PCR Primer Index 11 (95% over 24bp)
CTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCGTCTTCTGCT	787	0.13071830288776165	Illumina PCR Primer Index 11 (96% over 25bp)
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	776	0.12889123639250705	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	739	0.12274564909028698	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCC	707	0.1174305465586372	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	698	0.1159356739716107	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTAGCG	40	6.8066583E-9	45.000004	1
TTAATCG	60	0.0	45.000004	20
TCGGACG	20	7.0306065E-4	45.000004	1
CGTTTGA	20	7.0306065E-4	45.000004	23
TGCGTTG	20	7.0306065E-4	45.000004	1
TAATCGT	60	0.0	45.000004	21
ACGAAAG	20	7.0306065E-4	45.000004	1
GTTTACG	25	3.8885853E-5	45.0	1
GACGTAG	25	3.8885853E-5	45.0	1
TAACGCC	55	1.8189894E-12	44.999996	12
ATAACGC	55	1.8189894E-12	44.999996	11
CGAATAT	165	0.0	42.272728	14
TACGAAT	160	0.0	42.187504	12
CGCATCG	60	3.6379788E-12	41.250004	21
CTCACGA	50	1.0804797E-9	40.5	24
TCACGAC	45	1.925764E-8	40.0	25
TGACTAT	170	0.0	39.705883	23
AGGGTAC	205	0.0	39.512196	6
CGTAAGG	40	3.45457E-7	39.375004	2
TCGTTGA	70	0.0	38.571426	24