SRR3551589_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551589_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	548703
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13218	2.4089534775643653	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTT	978	0.1782385006096194	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCC	757	0.13796170241460315	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTC	754	0.1374149585477025	No Hit
CTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTCTGCT	720	0.13121852805616155	Illumina Paired End PCR Primer 2 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTCTGC	695	0.12666232916532258	TruSeq Adapter, Index 22 (95% over 22bp)
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	679	0.12374636187518567	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCT	636	0.11590969978294269	No Hit
CCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTCTGC	636	0.11590969978294269	TruSeq Adapter, Index 22 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATATGCG	20	7.0300605E-4	45.0	1
TACGGGT	20	7.0300605E-4	45.0	4
TACGAAT	50	2.1827873E-11	45.0	12
CGAATAT	50	2.1827873E-11	45.0	14
TACTAGA	20	7.0300605E-4	45.0	30
CGCGTAA	25	3.8881313E-5	45.0	31
TCGCGTA	25	3.8881313E-5	45.0	30
GCGTAAG	40	6.8030204E-9	45.0	1
CGTTTTT	5805	0.0	43.720932	1
ACGGTCT	55	6.002665E-11	40.909092	30
CGGTCTA	50	1.0786607E-9	40.5	31
TCGACGG	40	3.4538243E-7	39.375	2
GTGCAAG	110	0.0	38.863636	1
CGCATCG	35	6.2423223E-6	38.571426	21
AATACGA	35	6.2423223E-6	38.571426	27
GTTTTTT	6795	0.0	38.443707	2
ACGTTAG	30	1.1391442E-4	37.500004	1
CGTTCTG	120	0.0	37.500004	1
CGTTCAT	30	1.1391442E-4	37.500004	17
CGTAAGG	60	1.546141E-10	37.500004	2