##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551588_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 703983 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.08856890010128 33.0 31.0 34.0 30.0 34.0 2 32.200548876890494 33.0 31.0 34.0 30.0 34.0 3 32.13406573738286 33.0 31.0 34.0 30.0 34.0 4 35.7792816019705 37.0 35.0 37.0 35.0 37.0 5 35.81998428939335 37.0 35.0 37.0 35.0 37.0 6 35.712214641546744 37.0 35.0 37.0 35.0 37.0 7 36.00192476238773 37.0 35.0 37.0 35.0 37.0 8 35.815894702002744 37.0 35.0 37.0 35.0 37.0 9 37.65024865657267 39.0 37.0 39.0 35.0 39.0 10 37.333438449508016 39.0 37.0 39.0 34.0 39.0 11 37.404435902571514 39.0 37.0 39.0 35.0 39.0 12 37.34052810934355 39.0 37.0 39.0 35.0 39.0 13 37.41891068392277 39.0 37.0 39.0 35.0 39.0 14 38.53750729776145 40.0 38.0 41.0 34.0 41.0 15 38.60657146550414 40.0 38.0 41.0 35.0 41.0 16 38.36323462356335 40.0 38.0 41.0 34.0 41.0 17 38.39428650975947 40.0 38.0 41.0 34.0 41.0 18 38.13781582793903 40.0 37.0 41.0 34.0 41.0 19 37.926557885630764 40.0 37.0 41.0 34.0 41.0 20 38.166099181372275 40.0 37.0 41.0 34.0 41.0 21 38.026571664372575 40.0 36.0 41.0 34.0 41.0 22 38.179122223121865 40.0 37.0 41.0 34.0 41.0 23 38.23595598189161 40.0 37.0 41.0 34.0 41.0 24 38.09162863307779 40.0 36.0 41.0 34.0 41.0 25 37.709450370250416 40.0 36.0 41.0 33.0 41.0 26 37.886349528326676 40.0 36.0 41.0 34.0 41.0 27 37.982390199763344 40.0 36.0 41.0 34.0 41.0 28 37.86726241968911 40.0 36.0 41.0 34.0 41.0 29 37.887399269584634 40.0 36.0 41.0 34.0 41.0 30 37.62233747121734 40.0 36.0 41.0 33.0 41.0 31 37.50173512712665 40.0 35.0 41.0 33.0 41.0 32 37.47548307274465 40.0 36.0 41.0 33.0 41.0 33 37.366277310673695 40.0 35.0 41.0 33.0 41.0 34 37.19329159937101 40.0 35.0 41.0 33.0 41.0 35 37.09521394692769 40.0 35.0 41.0 32.0 41.0 36 36.9165860539246 40.0 35.0 41.0 32.0 41.0 37 36.92571269476678 40.0 35.0 41.0 32.0 41.0 38 36.7550651081063 39.0 35.0 41.0 31.0 41.0 39 36.67690697076492 39.0 35.0 41.0 31.0 41.0 40 36.56879214412848 39.0 35.0 41.0 31.0 41.0 41 36.383060386401375 39.0 35.0 41.0 31.0 41.0 42 36.4278427177929 39.0 35.0 41.0 31.0 41.0 43 36.39902668104202 39.0 35.0 41.0 31.0 41.0 44 36.40010341158806 39.0 35.0 41.0 31.0 41.0 45 36.3621820413277 39.0 35.0 41.0 31.0 41.0 46 36.271864519455725 39.0 35.0 41.0 31.0 41.0 47 36.22262611455106 39.0 35.0 41.0 31.0 41.0 48 36.14573647375008 39.0 35.0 41.0 31.0 41.0 49 36.10377807418645 38.0 35.0 41.0 31.0 41.0 50 35.98568431339962 38.0 35.0 41.0 30.0 41.0 51 35.13320350065271 37.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 13.0 9 24.0 10 37.0 11 32.0 12 29.0 13 32.0 14 39.0 15 56.0 16 103.0 17 122.0 18 245.0 19 371.0 20 576.0 21 940.0 22 1350.0 23 2058.0 24 3092.0 25 4955.0 26 7198.0 27 8418.0 28 8860.0 29 8695.0 30 9271.0 31 10858.0 32 14205.0 33 19966.0 34 38725.0 35 51880.0 36 55249.0 37 82331.0 38 146442.0 39 227706.0 40 103.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.898548686544984 20.44466982867484 23.66932156032177 15.987459924458403 2 36.483977596049904 23.982539351092285 23.21007751607638 16.323405536781426 3 31.48058973014973 23.176980125940542 28.587480095400032 16.754950048509695 4 28.43321500661238 24.26223360507285 28.58875853536236 18.715792852952415 5 25.17603408036842 28.16232778348341 26.316970722304372 20.3446674138438 6 25.675051812330697 33.4881666176598 26.11213623056239 14.724645339447118 7 75.89728729244882 6.130119619365808 12.91309591282744 5.059497175357928 8 76.12982131670793 6.212650021378357 12.254273185574084 5.403255476339627 9 69.40892038586159 8.331025038956906 14.476770035640065 7.783284539541438 10 37.78898069981803 24.70372153873034 21.08630464087911 16.420993120572515 11 29.153828998711617 23.164763921856068 27.11855257868443 20.56285450074789 12 26.682178404876254 20.33784906737805 31.639542432132593 21.340430095613105 13 24.37487837064247 21.15363581222842 33.433335748164374 21.038150068964732 14 20.7909850095812 26.0546064322576 31.375331506584676 21.77907705157653 15 19.72362968992149 23.895037238115123 34.94544612582974 21.435886946133643 16 21.672540388049143 22.381506371602725 33.98945713177733 21.956496108570803 17 22.210053367765983 22.659353990082145 30.651876536791374 24.478716105360498 18 22.326817550991997 23.441049002603755 30.772902186558483 23.459231259845765 19 24.402862000928998 24.37956598383768 29.019166656013002 22.19840535922032 20 25.63201100026563 24.08864986796556 28.41162357613749 21.867715555631314 21 24.53454131704885 24.85287286766868 28.953398022395426 21.659187792887042 22 22.82057947422026 23.41221307900901 28.650691849092947 25.116515597677786 23 23.18578715679214 24.8447760812406 28.502676911232232 23.46675985073503 24 23.43053738513572 24.099019436548893 29.18792073104038 23.282522447275007 25 23.65824174731492 24.614656888021443 28.36247466203019 23.364626702633444 26 21.8135949305594 25.439392712608118 28.99473424784405 23.752278108988428 27 23.70284509711172 24.086519134695013 29.716342582136217 22.49429318605705 28 22.052521154630153 24.673749224057968 30.59676156952654 22.67696805178534 29 22.993310918019326 23.95739669849982 29.923733953802863 23.12555842967799 30 23.003112291063847 23.254822914757884 30.35144314564414 23.390621648534125 31 23.88097439852951 23.677276297865145 28.109059451719716 24.33268985188563 32 23.448009397954213 24.374026077334253 28.787058778408003 23.390905746303535 33 22.851119984431442 23.91591842416649 28.09243973220944 25.14052185919262 34 22.36801172755592 23.17825856590287 29.463353518479853 24.990376188061358 35 23.302267242248746 22.323124279989713 29.65540361059855 24.719204867162986 36 23.28976694039487 24.22643728612765 28.1040877407551 24.37970803272238 37 22.810920150060443 24.469767025624197 29.35823734379949 23.361075480515865 38 22.85765423312779 24.93199409644835 27.487595581143292 24.722756089280566 39 22.9251274533618 23.372723489061524 28.443300477426302 25.25884858015037 40 23.289624891510165 23.027118552578685 30.853443904185184 22.829812651725963 41 21.73632033728087 23.704123537074047 29.791202344374796 24.768353781270285 42 22.018713520070797 25.229018314362705 28.467732885595247 24.28453527997125 43 22.675263465168904 23.22996435993483 29.57145271973897 24.523319455157296 44 23.274425660846923 23.46349272638686 28.71418770055527 24.54789391221095 45 22.331505164187206 23.202264827417707 28.84984438544681 25.61638562294828 46 23.329540628111758 23.96449914273498 28.61248069910779 24.09347953004547 47 22.710775686344697 23.88182669183773 29.935239913463818 23.472157708353752 48 22.222979816273973 23.467896241812657 29.555543244652217 24.753580697261153 49 21.99967896952057 22.79785165266775 30.10669291730056 25.09577646051112 50 20.961017524570906 22.51204929664495 31.10501247899452 25.421920699789624 51 21.573958462065136 22.986634620438277 29.09146953832692 26.347937379169668 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 373.0 1 835.5 2 1298.0 3 7401.5 4 13505.0 5 8704.0 6 3903.0 7 3797.5 8 3692.0 9 3574.0 10 3456.0 11 3453.5 12 3451.0 13 3274.5 14 3098.0 15 2941.0 16 2784.0 17 2659.5 18 2535.0 19 2477.5 20 2420.0 21 2376.5 22 2333.0 23 2447.5 24 2562.0 25 3286.5 26 4404.5 27 4798.0 28 5832.5 29 6867.0 30 8048.5 31 9230.0 32 10419.5 33 11609.0 34 12571.5 35 13534.0 36 14151.5 37 14769.0 38 16274.0 39 17779.0 40 21230.0 41 24681.0 42 27701.5 43 30722.0 44 34591.5 45 38461.0 46 46785.0 47 55109.0 48 58794.5 49 62480.0 50 61694.0 51 60908.0 52 53896.5 53 46885.0 54 42962.5 55 39040.0 56 38312.5 57 37585.0 58 36715.5 59 35846.0 60 35133.5 61 34421.0 62 32117.0 63 29813.0 64 26870.5 65 23928.0 66 21083.0 67 18238.0 68 15359.0 69 12480.0 70 10926.5 71 9373.0 72 8086.0 73 6799.0 74 5706.5 75 3446.0 76 2278.0 77 1676.5 78 1075.0 79 868.0 80 661.0 81 495.0 82 329.0 83 237.0 84 145.0 85 92.0 86 39.0 87 36.5 88 34.0 89 31.0 90 28.0 91 15.0 92 2.0 93 2.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 703983.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.55631387363843 #Duplication Level Percentage of deduplicated Percentage of total 1 72.85598161996148 22.99066223571537 2 8.261292517130842 5.213918793450427 3 3.0719576965276754 2.9081898383449993 4 1.8656353464763342 2.354902982686456 5 1.4066876007012843 2.2194937724942547 6 1.1850155259325459 2.243683312887729 7 0.9778979184368255 2.1601197555399096 8 0.9278546190088505 2.342373726923879 9 0.8315118344530716 2.3615503593881404 >10 8.472255715857795 46.9552983932314 >50 0.0864362725037484 1.8530612168450613 >100 0.04887496035455342 2.9055474344600816 >500 0.005883097079714764 1.354522629305705 >1k 0.00226272964604414 0.8668373600301139 >5k 4.52545929208828E-4 1.269838188696503 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8892 1.2630986827806923 No Hit GAATCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTC 1453 0.20639702947372307 TruSeq Adapter, Index 23 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGC 1359 0.193044434311624 TruSeq Adapter, Index 23 (95% over 24bp) GAATGATACCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCG 1135 0.16122548413811127 No Hit CCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGC 1073 0.15241845328651402 TruSeq Adapter, Index 23 (95% over 24bp) CGCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTG 1050 0.14915132893834085 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGC 998 0.1417647869337754 No Hit CGTTTCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTT 989 0.14048634697144674 No Hit CGTTCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTC 901 0.12798604511756675 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCC 869 0.12344048080706493 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG 865 0.12287228526825222 No Hit CTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGCT 768 0.10909354345204358 Illumina Single End Adapter 1 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.11221861891551359 0.0 2 0.0 0.0 0.0 0.5622294856551934 0.0 3 0.0 0.0 0.0 0.9187721862601795 0.0 4 0.0 0.0 0.0 1.3488962091414138 0.0 5 0.0 0.0 0.0 2.560573195659554 0.0 6 0.0 0.0 0.0 3.658469025530446 0.0 7 0.0 0.0 0.0 4.490449343236982 0.0 8 0.0 0.0 0.0 5.675421139430924 0.0 9 1.4204888470318176E-4 0.0 0.0 6.302851063164877 0.0 10 1.4204888470318176E-4 0.0 0.0 7.430151012169328 0.0 11 1.4204888470318176E-4 0.0 0.0 8.611287488476284 0.0 12 1.4204888470318176E-4 0.0 0.0 9.5897202063118 0.0 13 1.4204888470318176E-4 0.0 0.0 9.977087514897377 0.0 14 1.4204888470318176E-4 0.0 0.0 10.150103056465852 0.0 15 1.4204888470318176E-4 0.0 0.0 10.421132328479523 0.0 16 1.4204888470318176E-4 0.0 0.0 10.920860304865316 0.0 17 1.4204888470318176E-4 0.0 0.0 11.463202946662065 0.0 18 1.4204888470318176E-4 0.0 0.0 12.124866651609485 0.0 19 1.4204888470318176E-4 0.0 0.0 12.503995124882277 0.0 20 1.4204888470318176E-4 0.0 0.0 12.86792436749183 0.0 21 1.4204888470318176E-4 0.0 0.0 13.281996866401604 0.0 22 2.840977694063635E-4 0.0 0.0 13.717376698016855 0.0 23 2.840977694063635E-4 0.0 0.0 14.145085889858136 0.0 24 2.840977694063635E-4 0.0 0.0 14.502907030425451 0.0 25 2.840977694063635E-4 0.0 0.0 14.832318394052129 0.0 26 2.840977694063635E-4 0.0 0.0 15.130905149698217 0.0 27 2.840977694063635E-4 0.0 0.0 15.432190834153666 0.0 28 2.840977694063635E-4 0.0 0.0 15.741999451691305 0.0 29 2.840977694063635E-4 0.0 0.0 16.047830700457254 0.0 30 2.840977694063635E-4 0.0 0.0 16.40337905886932 0.0 31 2.840977694063635E-4 0.0 0.0 16.774552794598733 0.0 32 2.840977694063635E-4 0.0 0.0 17.124703295392077 0.0 33 2.840977694063635E-4 0.0 0.0 17.457807930021037 0.0 34 2.840977694063635E-4 0.0 0.0 17.755968539013015 0.0 35 2.840977694063635E-4 0.0 0.0 18.08694244037143 0.0 36 2.840977694063635E-4 0.0 0.0 18.409819555301763 0.0 37 2.840977694063635E-4 0.0 0.0 18.738662723389627 0.0 38 2.840977694063635E-4 0.0 0.0 19.04960773200489 0.0 39 2.840977694063635E-4 0.0 0.0 19.353166198615593 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGTCTA 60 0.0 45.000004 31 GGCGTAT 20 7.0314226E-4 45.0 36 TAACGTC 125 0.0 43.2 32 CGTTTTT 3705 0.0 41.963562 1 CTACGAA 120 0.0 41.250004 11 TACGAAT 120 0.0 41.250004 12 GCTACGA 120 0.0 41.250004 10 TAACGCC 45 1.9264917E-8 40.0 12 ATAACGC 45 1.9264917E-8 40.0 11 CGAATAT 125 0.0 39.600002 14 AAGCTAC 125 0.0 39.600002 8 CCCGATG 40 3.4556797E-7 39.375 15 ACATACG 70 0.0 38.571426 17 CGAAAGG 65 9.094947E-12 38.076927 2 TACGAAA 65 9.094947E-12 38.076927 20 TACTGAC 125 0.0 37.800003 20 GACCTAT 125 0.0 37.800003 33 TATACGG 55 2.746674E-9 36.81818 2 TACGGGC 80 0.0 36.5625 4 GGTACGT 25 0.0021065553 36.0 1 >>END_MODULE