SRR3551586_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551586_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	669055
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3074	0.4594540060234211	No Hit
GCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCTTCTGC	1586	0.2370507656321229	TruSeq Adapter, Index 18 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCTTCTGCT	1061	0.15858188041341892	RNA PCR Primer, Index 34 (96% over 26bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCC	807	0.12061788642189356	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	784	0.11718020192659796	No Hit
CCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCTTCTGC	781	0.11673180829677679	RNA PCR Primer, Index 34 (96% over 25bp)
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	737	0.11015536839273303	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGAACG	25	3.889051E-5	45.000004	1
CGATTCG	35	1.2109012E-7	45.000004	10
TTATACG	35	1.2109012E-7	45.000004	1
CAATCGC	25	3.889051E-5	45.000004	45
TCTAACG	20	7.031171E-4	45.0	1
CCTATAC	20	7.031171E-4	45.0	15
CGAATAT	125	0.0	44.999996	14
AGTAACG	30	2.1641372E-6	44.999996	1
CTACGAA	130	0.0	43.269234	11
CTTATCG	60	3.6379788E-12	41.249996	12
TATCGAC	60	3.6379788E-12	41.249996	14
CGTAAGG	55	6.002665E-11	40.909092	2
TTTGCGC	55	6.002665E-11	40.909092	13
GCGTAAG	45	1.9263098E-8	40.0	1
GATTTCG	40	3.455334E-7	39.375	9
TACGAAT	145	0.0	38.793102	12
GCTACGA	145	0.0	38.793102	10
ATTAGCG	35	6.244374E-6	38.57143	1
TATGACG	35	6.244374E-6	38.57143	1
ATAACGC	70	0.0	38.57143	11