SRR3551585_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551585_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	374582
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4186	1.1175123203998056	No Hit
GCTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCGTCTTCTGC	819	0.21864371486083156	Illumina PCR Primer Index 7 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCGTCTTCTGCT	528	0.14095712020331996	TruSeq Adapter, Index 23 (96% over 26bp)
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	520	0.13882140626084544	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCC	489	0.13054551473375656	No Hit
CCTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCGTCTTCTGC	457	0.12200265896385838	Illumina PCR Primer Index 7 (95% over 23bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	436	0.1163964098648627	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	391	0.10438301893844339	No Hit
GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	380	0.10144641226754088	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACGACG	45	3.8380676E-10	45.000004	26
TCACGAC	50	2.1827873E-11	45.0	25
TCGTTTA	40	6.7939254E-9	45.0	38
AAATACG	20	7.02719E-4	45.0	1
CGCATCG	40	6.7939254E-9	45.0	21
TATAGCG	25	3.8857543E-5	45.0	1
CACAACG	20	7.02719E-4	45.0	12
GCTCGTC	20	7.02719E-4	45.0	27
CGTCCAT	20	7.02719E-4	45.0	30
CGTAAGG	80	0.0	42.1875	2
CGTTTTT	1630	0.0	41.68712	1
CGTTCAT	55	6.002665E-11	40.909092	17
GCGTAAG	55	6.002665E-11	40.909092	1
TAACGGG	105	0.0	40.714283	3
CGGTCTA	50	1.0768417E-9	40.5	31
TAACGCC	45	1.922308E-8	40.000004	12
ATGGTCG	45	1.922308E-8	40.000004	44
ATAACGC	45	1.922308E-8	40.000004	11
AGTCGGC	45	1.922308E-8	40.000004	30
CCAGTCG	40	3.4498953E-7	39.375	28