SRR3551583_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551583_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	410641
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2235	0.5442710299263834	No Hit
GCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTGC	1581	0.3850078292230927	Illumina Single End Adapter 2 (95% over 21bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGC	1008	0.24546988732250313	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCG	977	0.23792071420048166	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTC	817	0.19895724002230658	No Hit
CTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTGCT	785	0.19116454518667156	Illumina Single End Adapter 2 (95% over 22bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCC	673	0.163890113261949	No Hit
TCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTGC	576	0.14026850704143035	Illumina Single End Adapter 2 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTGC	542	0.13198876877856813	Illumina Single End Adapter 2 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTATCGT	30	2.16208E-6	45.000004	25
CGAATAT	65	0.0	45.000004	14
GCAACCG	20	7.0279854E-4	45.0	1
TAGCGGA	20	7.0279854E-4	45.0	3
GCCGCAT	20	7.0279854E-4	45.0	19
GTTACTC	20	7.0279854E-4	45.0	9
TACGCGG	20	7.0279854E-4	45.0	2
AACGCCG	20	7.0279854E-4	45.0	13
CATCGTT	20	7.0279854E-4	45.0	36
ATAACGG	20	7.0279854E-4	45.0	2
GTGCGAA	25	3.8864117E-5	45.0	1
GCATCGT	20	7.0279854E-4	45.0	35
AATCGGT	45	3.8380676E-10	45.0	26
AAATGCG	20	7.0279854E-4	45.0	1
ACGGTCG	20	7.0279854E-4	45.0	2
CGTTTTT	1340	0.0	42.145523	1
CTACGAA	75	0.0	42.0	11
ACAACGA	140	0.0	41.785717	13
CGCGACC	120	0.0	41.250004	10
CACAACG	145	0.0	40.34483	12