##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551583_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 410641 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.041125946995066 33.0 31.0 34.0 30.0 34.0 2 32.13072002065064 33.0 31.0 34.0 30.0 34.0 3 32.09095292481754 33.0 31.0 34.0 30.0 34.0 4 35.73467335214944 37.0 35.0 37.0 33.0 37.0 5 35.80349745885092 37.0 35.0 37.0 35.0 37.0 6 35.71203070321765 37.0 35.0 37.0 35.0 37.0 7 36.01890459062783 37.0 35.0 37.0 35.0 37.0 8 35.86014547987171 37.0 35.0 37.0 35.0 37.0 9 37.707333169362045 39.0 38.0 39.0 35.0 39.0 10 37.25071534503374 39.0 37.0 39.0 34.0 39.0 11 37.345679072474496 39.0 37.0 39.0 34.0 39.0 12 37.25819389685881 39.0 37.0 39.0 34.0 39.0 13 37.321358558935906 39.0 37.0 39.0 34.0 39.0 14 38.34164878811419 40.0 38.0 41.0 34.0 41.0 15 38.434335587532665 40.0 38.0 41.0 34.0 41.0 16 38.214338071454144 40.0 37.0 41.0 34.0 41.0 17 38.238524648050245 40.0 37.0 41.0 34.0 41.0 18 38.065816613538345 40.0 37.0 41.0 34.0 41.0 19 37.85027798003609 39.0 37.0 41.0 33.0 41.0 20 38.12887899649572 40.0 37.0 41.0 34.0 41.0 21 38.00887393124408 40.0 36.0 41.0 34.0 41.0 22 38.180240161113964 40.0 37.0 41.0 34.0 41.0 23 38.228301606512744 40.0 37.0 41.0 34.0 41.0 24 38.12504352950631 40.0 36.0 41.0 34.0 41.0 25 37.75081397132775 40.0 36.0 41.0 33.0 41.0 26 37.92743539977742 40.0 36.0 41.0 34.0 41.0 27 38.0345849537674 40.0 36.0 41.0 34.0 41.0 28 37.942928251197515 40.0 36.0 41.0 34.0 41.0 29 37.97967324256467 40.0 36.0 41.0 34.0 41.0 30 37.6872207110347 40.0 36.0 41.0 33.0 41.0 31 37.595016084609185 40.0 36.0 41.0 33.0 41.0 32 37.605387674391984 40.0 36.0 41.0 33.0 41.0 33 37.523773807291526 40.0 36.0 41.0 33.0 41.0 34 37.39625853239204 40.0 36.0 41.0 33.0 41.0 35 37.33874600928792 40.0 36.0 41.0 33.0 41.0 36 37.22371365742826 40.0 35.0 41.0 33.0 41.0 37 37.27033101906532 40.0 35.0 41.0 33.0 41.0 38 37.10309004702404 40.0 35.0 41.0 33.0 41.0 39 37.0607391858095 39.0 35.0 41.0 32.0 41.0 40 36.96637695700137 39.0 35.0 41.0 32.0 41.0 41 36.796096833974204 39.0 35.0 41.0 31.0 41.0 42 36.88003633343967 39.0 35.0 41.0 32.0 41.0 43 36.8400281511101 39.0 35.0 41.0 32.0 41.0 44 36.85998719075786 39.0 35.0 41.0 32.0 41.0 45 36.78892755472542 39.0 35.0 41.0 32.0 41.0 46 36.62813990809491 39.0 35.0 41.0 32.0 41.0 47 36.55105798008479 39.0 35.0 41.0 31.0 41.0 48 36.53037568094759 39.0 35.0 41.0 31.0 41.0 49 36.53342457280203 39.0 35.0 41.0 31.0 41.0 50 36.381846917380386 39.0 35.0 41.0 31.0 41.0 51 35.43612060169345 37.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 4.0 9 9.0 10 15.0 11 6.0 12 19.0 13 16.0 14 25.0 15 34.0 16 47.0 17 59.0 18 107.0 19 167.0 20 267.0 21 486.0 22 758.0 23 1051.0 24 1554.0 25 2285.0 26 3293.0 27 3665.0 28 4096.0 29 4339.0 30 4993.0 31 6157.0 32 8205.0 33 12079.0 34 24166.0 35 33181.0 36 30966.0 37 47396.0 38 90863.0 39 130288.0 40 45.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.78934397685569 21.020063753984626 24.441056786828398 10.749535482331282 2 34.86329908606301 24.270348065585267 24.096960605492388 16.769392242859336 3 32.50040789887031 24.836536049736875 26.385090626605724 16.2779654247871 4 28.43529993351857 24.921768649501633 27.694993924133243 18.94793749284655 5 24.84116296229553 29.108880993373777 25.978896408298247 20.071059636032444 6 24.916167650088518 34.59201589709747 25.660857050318892 14.830959402495122 7 77.4771637513059 6.080737188931451 11.415323847350848 5.026775212411814 8 78.34970205118339 5.788511132595138 10.393506737028208 5.468280079193262 9 72.2468043863131 7.64974758974384 12.558414771053062 7.5450332528899935 10 37.65649314121093 25.51644867414603 20.926064372529776 15.900993812113256 11 30.245883874235645 25.31383860841952 24.769567578493138 19.670709938851697 12 26.628855861932934 22.7088868378949 30.759227646533105 19.903029653639067 13 24.737179190582527 25.395661904193688 31.60546560134034 18.26169330388344 14 21.48811248754995 28.673707691146284 30.338909168836036 19.499270652467725 15 19.92908647699572 25.46920546170499 34.37966496282641 20.222043098472874 16 22.80507791477227 24.600319987531687 31.822443448170056 20.772158649525984 17 22.366738830267803 24.95074773342165 29.076492605463166 23.60602083084738 18 24.37895874985693 24.066520391290688 30.422193594891887 21.13232726396049 19 23.057609931789568 26.977335434113982 28.330829118378343 21.634225515718107 20 25.039876680604227 26.423810579070285 28.43797867236832 20.09833406795717 21 23.697828516879706 28.166939005116394 28.40461619760326 19.730616280400643 22 22.282236795643882 24.957809863116445 28.10727618528106 24.65267715595861 23 21.50710718121181 27.541575244556682 28.241943692909377 22.70937388132213 24 22.938284292118908 25.979626973439085 29.131284991026224 21.950803743415783 25 21.496635747526426 27.442705428829562 27.88737607788799 23.173282745756023 26 19.91057882676109 28.629630260982218 29.049948738679284 22.409842173577406 27 22.5028674681778 27.45122868880604 28.09656122988206 21.9493426131341 28 19.629554769251 28.283585905937304 29.810710572008155 22.276148752803543 29 21.320082505156574 28.28261181908285 28.42020158727453 21.977104088486048 30 22.3272883126624 28.811540981051575 28.60746978504338 20.253700921242643 31 25.48844367708047 28.557060790325366 24.405989660068037 21.548505872526125 32 24.04557752391992 29.99237777036389 25.45410711546095 20.507937590255235 33 23.688818213476004 27.53183437601214 26.078496789166206 22.70085062134565 34 23.162324268643413 27.782418219320526 27.3197269634547 21.735530548581362 35 22.488499687074597 29.141512902997995 26.61448808082973 21.75549932909768 36 23.81374485255978 29.518728037385454 25.631390922971647 21.03613618708312 37 23.99273331206577 29.55257755557774 25.736348781539103 20.71834035081738 38 22.805564958199497 29.974113641842877 25.436086508653545 21.784234891304084 39 23.585321485190228 26.276236420620446 27.161681371319474 22.976760722869855 40 25.360351255719713 24.582542902437897 28.040307714037322 22.016798127805064 41 22.856948039771964 26.46642687895266 25.74560260665642 24.93102247461895 42 22.7500420074956 27.03748529737654 26.31933976393005 23.893132931197812 43 22.62608945526628 26.560913303834738 26.573089389515413 24.23990785138357 44 22.915880294466458 26.64103194761361 26.658565510993785 23.784522246926144 45 23.67810325807701 25.85591794292338 26.452546141276688 24.013432657722923 46 24.3192959300216 27.37817217472196 26.75280841416225 21.54972348109419 47 22.393769740478913 26.819046320265144 28.336186596077837 22.450997343178106 48 22.127600507499253 26.053414052664003 27.962380765680972 23.856604674155772 49 23.0868325374232 24.649511373681634 29.021456698186494 23.242199390708674 50 21.668318555624012 24.37798466300248 29.01536865534615 24.938328126027358 51 21.57334508731471 24.404041486359134 26.97636134725953 27.04625207906663 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 214.0 1 419.0 2 624.0 3 2136.0 4 3648.0 5 2430.5 6 1213.0 7 1207.0 8 1201.0 9 1268.0 10 1335.0 11 1347.5 12 1360.0 13 1372.0 14 1384.0 15 1385.5 16 1387.0 17 1327.0 18 1267.0 19 1305.5 20 1344.0 21 1367.5 22 1391.0 23 1553.0 24 1715.0 25 1925.0 26 2544.5 27 2954.0 28 3364.5 29 3775.0 30 4134.5 31 4494.0 32 5648.5 33 6803.0 34 8108.5 35 9414.0 36 10125.5 37 10837.0 38 12429.5 39 14022.0 40 15963.5 41 17905.0 42 19928.5 43 21952.0 44 25491.0 45 29030.0 46 35128.5 47 41227.0 48 43597.0 49 45967.0 50 44450.0 51 42933.0 52 37929.0 53 32925.0 54 28321.0 55 23717.0 56 21234.0 57 18751.0 58 17192.5 59 15634.0 60 14629.0 61 13624.0 62 12253.5 63 10883.0 64 9524.0 65 8165.0 66 6700.5 67 5236.0 68 4356.0 69 3476.0 70 2863.5 71 2251.0 72 2038.0 73 1825.0 74 1537.5 75 977.5 76 705.0 77 545.5 78 386.0 79 289.5 80 193.0 81 119.0 82 45.0 83 36.5 84 28.0 85 21.0 86 14.0 87 7.5 88 1.0 89 0.5 90 0.0 91 0.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 410641.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.34241815783543 #Duplication Level Percentage of deduplicated Percentage of total 1 73.99471759828158 27.63141686025975 2 9.73217622988853 7.268459887244877 3 3.6463139536287548 4.084865411734653 4 2.070619496214254 3.0928775629359686 5 1.427557522344407 2.665422497187417 6 1.0982254404344667 2.4606236176966103 7 0.9270879634322918 2.423379447970928 8 0.7248112841182682 2.1652964845649625 9 0.5938444449676233 1.9958028826219811 >10 5.646422677290683 39.2549540471706 >50 0.09695289872547408 2.4672916248101235 >100 0.03537470629172702 2.2405238936779615 >500 0.003930522921303003 1.0690129288538806 >1k 0.0019652614606515016 1.180072853270279 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2235 0.5442710299263834 No Hit GCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTGC 1581 0.3850078292230927 Illumina Single End Adapter 2 (95% over 21bp) GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGC 1008 0.24546988732250313 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCG 977 0.23792071420048166 No Hit GAATCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTC 817 0.19895724002230658 No Hit CTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTGCT 785 0.19116454518667156 Illumina Single End Adapter 2 (95% over 22bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCC 673 0.163890113261949 No Hit TCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTGC 576 0.14026850704143035 Illumina Single End Adapter 2 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTGC 542 0.13198876877856813 Illumina Single End Adapter 2 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.2157602382616446 0.0 2 0.0 0.0 0.0 1.0741742787495647 0.0 3 2.4352171361359437E-4 0.0 0.0 1.4716017153669507 0.0 4 2.4352171361359437E-4 0.0 0.0 2.065794696584121 0.0 5 2.4352171361359437E-4 0.0 0.0 3.759244693053056 0.0 6 2.4352171361359437E-4 0.0 0.0 4.7433159377655905 0.0 7 2.4352171361359437E-4 0.0 0.0 5.6840403174549055 0.0 8 2.4352171361359437E-4 0.0 0.0 7.109859950662501 0.0 9 2.4352171361359437E-4 0.0 0.0 7.714280843851442 0.0 10 2.4352171361359437E-4 0.0 0.0 9.259913160156925 0.0 11 2.4352171361359437E-4 0.0 0.0 11.113600444183605 0.0 12 2.4352171361359437E-4 0.0 0.0 12.657528108493795 0.0 13 2.4352171361359437E-4 0.0 0.0 13.201068573279336 0.0 14 2.4352171361359437E-4 0.0 0.0 13.416341768113753 0.0 15 2.4352171361359437E-4 0.0 0.0 13.846888157782589 0.0 16 2.4352171361359437E-4 0.0 0.0 14.68435933089974 0.0 17 2.4352171361359437E-4 0.0 0.0 15.732233264579037 0.0 18 2.4352171361359437E-4 0.0 0.0 16.84902384321098 0.0 19 4.8704342722718873E-4 0.0 0.0 17.554749769263175 0.0 20 4.8704342722718873E-4 0.0 0.0 18.16671983557414 0.0 21 4.8704342722718873E-4 0.0 0.0 18.899720193551058 0.0 22 4.8704342722718873E-4 0.0 0.0 19.70869932617542 0.0 23 4.8704342722718873E-4 0.0 0.0 20.447787726992676 0.0 24 4.8704342722718873E-4 0.0 0.0 21.05707905445389 0.0 25 4.8704342722718873E-4 0.0 0.0 21.581137782150346 0.0 26 4.8704342722718873E-4 0.0 0.0 22.07792207792208 0.0 27 4.8704342722718873E-4 0.0 0.0 22.55985154916338 0.0 28 7.30565140840783E-4 0.0 0.0 23.06735080033411 0.0 29 7.30565140840783E-4 0.0 0.0 23.571440747514252 0.0 30 7.30565140840783E-4 0.0 0.0 24.14980481734654 0.0 31 7.30565140840783E-4 0.0 0.0 24.688961891287036 0.0 32 7.30565140840783E-4 0.0 0.0 25.20327975043895 0.0 33 7.30565140840783E-4 0.0 0.0 25.715405914168336 0.0 34 7.30565140840783E-4 0.0 0.0 26.225340382475203 0.0 35 9.740868544543775E-4 0.0 0.0 26.779108759232518 0.0 36 9.740868544543775E-4 0.0 0.0 27.26639570817332 0.0 37 9.740868544543775E-4 0.0 0.0 27.73785374572924 0.0 38 9.740868544543775E-4 0.0 0.0 28.262886560280148 0.0 39 9.740868544543775E-4 0.0 0.0 28.74676420523036 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTATCGT 30 2.16208E-6 45.000004 25 CGAATAT 65 0.0 45.000004 14 GCAACCG 20 7.0279854E-4 45.0 1 TAGCGGA 20 7.0279854E-4 45.0 3 GCCGCAT 20 7.0279854E-4 45.0 19 GTTACTC 20 7.0279854E-4 45.0 9 TACGCGG 20 7.0279854E-4 45.0 2 AACGCCG 20 7.0279854E-4 45.0 13 CATCGTT 20 7.0279854E-4 45.0 36 ATAACGG 20 7.0279854E-4 45.0 2 GTGCGAA 25 3.8864117E-5 45.0 1 GCATCGT 20 7.0279854E-4 45.0 35 AATCGGT 45 3.8380676E-10 45.0 26 AAATGCG 20 7.0279854E-4 45.0 1 ACGGTCG 20 7.0279854E-4 45.0 2 CGTTTTT 1340 0.0 42.145523 1 CTACGAA 75 0.0 42.0 11 ACAACGA 140 0.0 41.785717 13 CGCGACC 120 0.0 41.250004 10 CACAACG 145 0.0 40.34483 12 >>END_MODULE