SRR3551578_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551578_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	327702
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1522	0.46444635675095053	No Hit
GCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGC	987	0.30118827471300147	No Hit
CCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGC	642	0.1959096984455389	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	613	0.1870601949332015	No Hit
CTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGCT	573	0.17485398319204642	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCC	536	0.16356323733147798	No Hit
TCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGC	493	0.1504415597097363	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	348	0.10619404214804914	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCTAGT	30	2.1607357E-6	45.000004	29
GTTAGCG	30	2.1607357E-6	45.000004	1
TGATTCG	30	2.1607357E-6	45.000004	15
GTCGTAG	35	1.2083729E-7	45.000004	1
ATCGCAT	35	1.2083729E-7	45.000004	10
ACCGGAT	20	7.0258987E-4	45.0	43
CGAACCA	20	7.0258987E-4	45.0	23
CGAACAC	20	7.0258987E-4	45.0	20
CTATATG	25	3.8846832E-5	45.0	1
GGATATC	20	7.0258987E-4	45.0	8
TTATCGG	20	7.0258987E-4	45.0	2
AAACGCA	25	3.8846832E-5	45.0	35
TACGCTC	20	7.0258987E-4	45.0	28
CTAACAA	25	3.8846832E-5	45.0	21
AATTGCG	20	7.0258987E-4	45.0	1
GATATCA	20	7.0258987E-4	45.0	9
TCATAGT	20	7.0258987E-4	45.0	30
TAATGCG	20	7.0258987E-4	45.0	1
CCGCATC	20	7.0258987E-4	45.0	18
TAATCTC	20	7.0258987E-4	45.0	40