##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551577_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 731212 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.97032734692538 33.0 31.0 34.0 30.0 34.0 2 32.08240838498274 33.0 31.0 34.0 30.0 34.0 3 32.01235209487809 33.0 31.0 34.0 30.0 34.0 4 35.68607872956133 37.0 35.0 37.0 33.0 37.0 5 35.72859991356816 37.0 35.0 37.0 35.0 37.0 6 35.59980279317079 37.0 35.0 37.0 33.0 37.0 7 35.90242091212945 37.0 35.0 37.0 35.0 37.0 8 35.7085756251265 37.0 35.0 37.0 35.0 37.0 9 37.553416792941036 39.0 37.0 39.0 35.0 39.0 10 37.19797541615838 39.0 37.0 39.0 34.0 39.0 11 37.27470008697888 39.0 37.0 39.0 34.0 39.0 12 37.226830248956524 39.0 37.0 39.0 34.0 39.0 13 37.32871451781426 39.0 37.0 39.0 34.0 39.0 14 38.43539766852842 40.0 38.0 41.0 34.0 41.0 15 38.50099423970066 40.0 38.0 41.0 34.0 41.0 16 38.24581243196228 40.0 38.0 41.0 34.0 41.0 17 38.25674770107712 40.0 37.0 41.0 34.0 41.0 18 38.00975503684294 39.0 37.0 41.0 33.0 41.0 19 37.76945947276577 39.0 37.0 41.0 33.0 41.0 20 37.98904011422132 40.0 36.0 41.0 34.0 41.0 21 37.835250242063864 40.0 36.0 41.0 33.0 41.0 22 37.992869373040925 40.0 36.0 41.0 34.0 41.0 23 38.0346465867628 40.0 36.0 41.0 34.0 41.0 24 37.87598535034983 40.0 36.0 41.0 34.0 41.0 25 37.49579738844548 39.0 35.0 41.0 33.0 41.0 26 37.66691465676165 39.0 35.0 41.0 33.0 41.0 27 37.76132913573628 40.0 36.0 41.0 33.0 41.0 28 37.649438193027464 40.0 35.0 41.0 33.0 41.0 29 37.64568278419939 40.0 35.0 41.0 33.0 41.0 30 37.329174028872615 39.0 35.0 41.0 33.0 41.0 31 37.193648353692225 39.0 35.0 41.0 33.0 41.0 32 37.112459861162016 39.0 35.0 41.0 32.0 41.0 33 36.97634065086459 40.0 35.0 41.0 32.0 41.0 34 36.7526066311822 39.0 35.0 41.0 31.0 41.0 35 36.64321838263048 39.0 35.0 41.0 31.0 41.0 36 36.458519553836645 39.0 35.0 41.0 30.0 41.0 37 36.44188005667303 39.0 35.0 41.0 30.0 41.0 38 36.2518106923847 39.0 35.0 41.0 30.0 41.0 39 36.15842464292162 39.0 35.0 41.0 30.0 41.0 40 36.07233469910231 39.0 35.0 41.0 29.0 41.0 41 35.880570887786305 39.0 35.0 41.0 29.0 41.0 42 35.92337379583486 39.0 35.0 41.0 29.0 41.0 43 35.88513727892868 39.0 35.0 41.0 29.0 41.0 44 35.90756716246451 39.0 35.0 41.0 29.0 41.0 45 35.85289218448275 38.0 35.0 41.0 29.0 41.0 46 35.74530779035355 38.0 35.0 40.0 29.0 41.0 47 35.672653074621316 38.0 35.0 40.0 29.0 41.0 48 35.593622642954436 38.0 35.0 40.0 29.0 41.0 49 35.52820932916856 38.0 35.0 40.0 29.0 41.0 50 35.37489811436355 37.0 35.0 40.0 28.0 41.0 51 34.50706908529948 36.0 34.0 40.0 25.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 5.0 8 16.0 9 39.0 10 41.0 11 44.0 12 40.0 13 44.0 14 65.0 15 89.0 16 121.0 17 154.0 18 297.0 19 475.0 20 786.0 21 1218.0 22 1712.0 23 2490.0 24 3627.0 25 6013.0 26 8684.0 27 10874.0 28 10928.0 29 10713.0 30 11344.0 31 13435.0 32 16702.0 33 23205.0 34 41475.0 35 54690.0 36 61104.0 37 90403.0 38 153851.0 39 206437.0 40 91.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.682986603064506 20.004184832852854 22.670716563732544 15.642112000350103 2 37.161726011061084 23.15552808214307 23.574011367428323 16.108734539367518 3 31.94873716514499 22.807339048046256 29.56064725414791 15.683276532660843 4 28.545073111491604 23.954065305273982 28.724364479795188 18.776497103439223 5 24.865702422826757 28.7188941100529 27.039080321438924 19.37632314568142 6 25.819051109664503 33.42149745901325 26.611297407591778 14.148154023730463 7 75.36596773575927 6.673440807864203 13.371635038812274 4.588956417564264 8 76.39467076579706 6.292429555313643 12.410764593578879 4.902135085310416 9 69.80437957801567 8.100113236653666 14.898688752372774 7.196818432957884 10 37.648178640394306 24.619399025180112 21.476534848990443 16.255887485435142 11 28.13766732493449 23.6224241396476 27.752006258102984 20.487902277314923 12 25.323298851769394 21.352494215083997 32.6503120845938 20.673894848552813 13 24.15687926346942 21.61903798077712 33.97140637735704 20.252676378396416 14 21.16226210729583 25.32603403664054 31.830440419467955 21.68126343659568 15 19.92007789806513 23.598080994294403 34.88974469784413 21.592096409796337 16 22.53997472689179 22.4874591773658 33.408368571631755 21.564197524110654 17 22.47939038199592 23.029162541096152 30.970635055223383 23.520812021684545 18 22.671537119193886 23.421114533131295 30.966669037160223 22.940679310514597 19 24.014102613195625 24.725797716667667 29.448778192918056 21.811321477218645 20 25.181753034687617 23.712821999638955 29.321181818679126 21.784243146994307 21 24.747268917906162 24.94598009879488 29.178268409161774 21.128482574137188 22 23.50344359775277 23.048445594437727 28.992139078680328 24.45597172912917 23 23.06649781458729 24.677384944448395 29.669370852775938 22.586746388188377 24 22.6548524914799 24.401678309436935 30.512765107793637 22.43070409128953 25 24.073182606412367 24.618988747449443 28.842524466228674 22.46530417990952 26 22.17209236172273 24.881976772810074 29.34634551949366 23.599585345973534 27 23.84452115118461 23.909481791874313 29.54191123778056 22.704085819160515 28 22.84344348834538 24.76244919394102 29.868902589126 22.525204728587607 29 24.122826211823657 24.645246522212435 28.495429506080317 22.73649775988359 30 25.046224624322356 23.932047067061262 28.617008473602727 22.404719835013648 31 25.379780419358543 24.583978381098778 26.315623923020958 23.72061727652172 32 25.186949885942788 25.743970284951562 26.400551413270023 22.668528415835627 33 24.999589722269327 25.403986805468183 26.00162469981346 23.59479877244903 34 23.77436365923973 25.795391760529096 26.70087471212179 23.729369868109384 35 24.878968069451815 25.135391651121697 26.115271631209552 23.87036864821693 36 25.472913464221048 26.42421076240543 25.80988824034616 22.292987533027357 37 24.006170577069305 27.793717827387955 26.102142743828054 22.097968851714686 38 22.96556949284202 27.15778734484664 26.411902430485277 23.464740731826065 39 23.636236823246882 25.69063417996422 27.270750480024947 23.402378516763946 40 23.332357784062623 24.711164477607042 30.028500626357335 21.927977111973 41 22.322664288879285 25.132109429276323 28.642308933660825 23.902917348183564 42 22.431934924481546 26.133734129089785 27.805615881577435 23.62871506485123 43 22.863957374878968 24.120501304683184 28.93346936319426 24.08207195724359 44 23.971570488449316 24.552523755080603 28.304240083587253 23.17166567288283 45 23.364085928567913 24.56975541976882 28.020191134718797 24.04596751694447 46 24.29117684064266 24.869941959377034 27.654223398959537 23.184657801020773 47 23.122295585958653 25.110227950307163 29.06202305213809 22.705453411596093 48 22.309261883010674 24.891960197589754 28.678686892447057 24.12009102695251 49 22.48089473367505 24.521069129062433 29.54505670038238 23.45297943688014 50 21.721470654201518 23.97922900608852 30.215997549274356 24.083302790435607 51 22.475834641663432 24.152502967675584 28.77428160369359 24.597380786967392 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 321.0 1 776.5 2 1232.0 3 9028.5 4 16825.0 5 10859.5 6 4894.0 7 4726.5 8 4559.0 9 4390.0 10 4221.0 11 4133.0 12 4045.0 13 3863.5 14 3682.0 15 3465.5 16 3249.0 17 3057.0 18 2865.0 19 2726.0 20 2587.0 21 2617.5 22 2648.0 23 2888.5 24 3129.0 25 3661.5 26 4820.5 27 5447.0 28 6812.0 29 8177.0 30 9620.5 31 11064.0 32 11717.5 33 12371.0 34 13055.0 35 13739.0 36 15776.5 37 17814.0 38 18567.5 39 19321.0 40 22005.0 41 24689.0 42 26800.5 43 28912.0 44 32461.0 45 36010.0 46 38962.0 47 41914.0 48 49228.5 49 56543.0 50 58130.5 51 59718.0 52 59379.5 53 59041.0 54 53423.5 55 47806.0 56 44451.0 57 41096.0 58 39785.5 59 38475.0 60 37070.5 61 35666.0 62 33326.5 63 30987.0 64 28054.0 65 25121.0 66 21952.5 67 18784.0 68 16187.5 69 13591.0 70 11524.0 71 9457.0 72 8256.5 73 7056.0 74 6005.5 75 3645.5 76 2336.0 77 1798.0 78 1260.0 79 987.5 80 715.0 81 563.5 82 412.0 83 300.5 84 189.0 85 116.0 86 43.0 87 35.5 88 28.0 89 16.5 90 5.0 91 6.5 92 8.0 93 9.5 94 11.0 95 5.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 731212.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.88714559100736 #Duplication Level Percentage of deduplicated Percentage of total 1 72.6734273468663 22.446747310601552 2 7.281218198779578 4.497920931711944 3 3.0912749675415174 2.864419799528742 4 1.9995043167599271 2.470359237664463 5 1.5299601105748537 2.362805034187961 6 1.2451840986492728 2.3076109525552417 7 1.1106278096220374 2.4012885997252233 8 1.0053557073354593 2.484205448257641 9 0.9273071385054531 2.577768353513852 >10 9.010796816650867 47.94141449675566 >50 0.06958570905837737 1.4996905922223112 >100 0.04995897057215614 3.245724478962543 >500 0.004460622372513942 0.9704933878008385 >1k 8.921244745027884E-4 0.34195976554822277 >5k 0.0 0.0 >10k+ 4.460622372513942E-4 1.587591610963808 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11523 1.5758767635104456 No Hit GAATCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTC 1254 0.17149609142081912 No Hit GCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCTGC 1228 0.16794035108833005 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG 990 0.13539165112169932 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCG 896 0.12253628222731573 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGC 825 0.11282637593474944 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCC 734 0.10038128477103767 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.102777306718161E-4 0.0 0.0 0.09573147049009043 0.0 2 4.102777306718161E-4 0.0 0.0 0.3992002319436771 0.0 3 4.102777306718161E-4 0.0 0.0 0.6278616871714359 0.0 4 4.102777306718161E-4 0.0 0.0 0.9333818372783816 0.0 5 4.102777306718161E-4 0.0 0.0 1.8013927561363872 0.0 6 4.102777306718161E-4 0.0 0.0 2.692242468668457 0.0 7 4.102777306718161E-4 0.0 0.0 3.356208596139013 0.0 8 4.102777306718161E-4 0.0 0.0 4.455616155095923 0.0 9 4.102777306718161E-4 0.0 0.0 5.008533776797973 0.0 10 4.102777306718161E-4 0.0 0.0 5.969130703544253 0.0 11 4.102777306718161E-4 0.0 0.0 6.824423012751432 0.0 12 4.102777306718161E-4 0.0 0.0 7.556632002757066 0.0 13 4.102777306718161E-4 0.0 0.0 7.855997986903935 0.0 14 4.102777306718161E-4 0.0 0.0 8.003697969945788 0.0 15 4.102777306718161E-4 0.0 0.0 8.211845538639956 0.0 16 4.102777306718161E-4 0.0 0.0 8.573847256336055 0.0 17 4.102777306718161E-4 0.0 0.0 8.999715540773401 0.0 18 4.102777306718161E-4 0.0 0.0 9.501758723872147 0.0 19 5.470369742290881E-4 0.0 0.0 9.788132579881074 0.0 20 5.470369742290881E-4 0.0 0.0 10.046470790960761 0.0 21 5.470369742290881E-4 0.0 0.0 10.340639923852454 0.0 22 5.470369742290881E-4 0.0 0.0 10.66667396049299 0.0 23 5.470369742290881E-4 0.0 0.0 10.97096327740792 0.0 24 5.470369742290881E-4 0.0 0.0 11.239968709485074 0.0 25 5.470369742290881E-4 0.0 0.0 11.476425441595598 0.0 26 5.470369742290881E-4 0.0 0.0 11.709599951860746 0.0 27 5.470369742290881E-4 0.0 0.0 11.93046613020574 0.0 28 5.470369742290881E-4 0.0 0.0 12.16459795517579 0.0 29 5.470369742290881E-4 0.0 0.0 12.402148761234772 0.0 30 5.470369742290881E-4 0.0 0.0 12.688112339513028 0.0 31 5.470369742290881E-4 0.0 0.0 12.934552496403231 0.0 32 5.470369742290881E-4 0.0 0.0 13.197677281007424 0.0 33 5.470369742290881E-4 0.0 0.0 13.457109566035568 0.0 34 6.837962177863602E-4 0.0 0.0 13.71476398089747 0.0 35 6.837962177863602E-4 0.0 0.0 13.994163115484975 0.0 36 8.205554613436322E-4 0.0 0.0 14.24962938244996 0.0 37 9.573147049009043E-4 0.0 0.0 14.515215833438182 0.0 38 9.573147049009043E-4 0.0 0.0 14.774784877709884 0.0 39 9.573147049009043E-4 0.0 0.0 15.035311236686487 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTAACA 20 7.0316E-4 45.000004 20 TCGAACG 20 7.0316E-4 45.000004 1 CGTTTTT 4610 0.0 42.706074 1 TACGAAT 75 0.0 42.0 12 TACGGGA 155 0.0 40.64516 4 TATAGCG 50 1.0804797E-9 40.5 1 GCGTAAG 50 1.0804797E-9 40.5 1 GTTAGCG 45 1.9266736E-8 40.0 1 CTAACGG 45 1.9266736E-8 40.0 2 TCGACAC 45 1.9266736E-8 40.0 34 CGAATAT 80 0.0 39.375004 14 ACGGGCT 245 0.0 37.65306 5 ATTAGCG 30 1.13951566E-4 37.500004 1 ATTACGG 30 1.13951566E-4 37.500004 2 CGTAAGA 30 1.13951566E-4 37.500004 12 AATATAC 85 0.0 37.058823 16 TATTAGT 55 2.746674E-9 36.818184 30 GTTTTTT 5590 0.0 36.426655 2 CGTTACC 50 4.8748916E-8 36.0 37 CGTTAAA 25 0.0021066084 36.0 36 >>END_MODULE