SRR3551576_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551576_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	472903
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5600	1.184175190261005	No Hit
GCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCTTCTGC	678	0.1433697819637431	Illumina PCR Primer Index 8 (95% over 23bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	543	0.11482270148423673	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	524	0.11080496423156545	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	511	0.1080559861113167	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCC	507	0.10721014668970169	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAACATA	25	3.887311E-5	45.000004	9
ACCGGTA	35	1.2099008E-7	45.0	41
TAACGCC	35	1.2099008E-7	45.0	12
CAATCGC	20	7.0290704E-4	45.0	11
CGCATCG	30	2.162782E-6	44.999996	21
ATAACGC	30	2.162782E-6	44.999996	11
CGAATAT	85	0.0	42.35294	14
CGTTTAC	65	0.0	41.538464	33
CGTTTTT	2365	0.0	41.479916	1
GTAACGG	60	3.6379788E-12	41.249996	2
ATAGGGT	55	6.002665E-11	40.90909	4
CGGTCTA	50	1.0786607E-9	40.500004	31
CTCCTTA	50	1.0786607E-9	40.500004	41
CTACGAA	95	0.0	40.263157	11
GCGAATG	45	1.924127E-8	40.0	1
ACATACG	85	0.0	39.705883	17
TCGTTTA	35	6.2404924E-6	38.571426	38
GCGTTTA	70	0.0	38.571426	32
GCGTTAG	35	6.2404924E-6	38.571426	1
GCCGATT	35	6.2404924E-6	38.571426	9