SRR3551575_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551575_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	405984
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1814	0.44681563805470165	No Hit
GCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTCTTCTGC	1699	0.418489398596989	Illumina PCR Primer Index 5 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTCTTCTGCT	683	0.16823323086624103	Illumina PCR Primer Index 5 (95% over 24bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCC	673	0.16577007960904863	No Hit
TCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTCTTCTGC	621	0.15296169307164814	Illumina PCR Primer Index 5 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTCTTCTGC	575	0.1416311972885631	Illumina PCR Primer Index 5 (95% over 23bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	546	0.13448805864270513	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	459	0.11305864270513123	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAACGCC	65	0.0	45.000004	12
AGTACGG	65	0.0	45.000004	2
TCACGAC	40	6.7957444E-9	45.0	25
TACCCAA	25	3.8863327E-5	45.0	41
TTGTGCG	25	3.8863327E-5	45.0	1
GATCGAC	20	7.027891E-4	45.0	9
CGCATCG	55	1.8189894E-12	45.0	21
GCGCAAC	20	7.027891E-4	45.0	15
CTAACGG	20	7.027891E-4	45.0	2
TACGAAT	100	0.0	45.0	12
TACCTTA	20	7.027891E-4	45.0	34
TATTACG	35	1.2093369E-7	45.0	1
CGAATAT	100	0.0	45.0	14
CTCGACG	25	3.8863327E-5	45.0	1
TTACGAG	25	3.8863327E-5	45.0	1
CGCACGG	25	3.8863327E-5	45.0	2
CGGTAGT	20	7.027891E-4	45.0	12
GTAACGC	20	7.027891E-4	45.0	17
ATCGCCA	55	1.8189894E-12	45.0	24
CCCATAG	20	7.027891E-4	45.0	31