SRR3551574_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551574_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	498933
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6662	1.3352494222671178	No Hit
GCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGC	2145	0.4299174438251228	No Hit
CCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGC	1686	0.3379211236779287	No Hit
CTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGCT	1484	0.29743472570465374	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGC	1224	0.24532352039251765	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCG	1135	0.22748545395874795	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCC	1106	0.2216730502893174	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTC	1028	0.20603968869567657	No Hit
CGCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTG	846	0.1695618449771813	No Hit
TCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGC	715	0.14330581460837427	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTC	573	0.1148450793994384	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGATCGT	30	2.1630221E-6	45.000004	28
CGTATGG	35	1.2100827E-7	45.000004	2
AAACACG	35	1.2100827E-7	45.000004	40
CGCACCC	30	2.1630221E-6	45.000004	31
GCTACGA	70	0.0	45.000004	10
TGATCCG	20	7.029445E-4	45.0	1
GTTTCGC	20	7.029445E-4	45.0	39
ACGCATA	20	7.029445E-4	45.0	33
GCAACGA	20	7.029445E-4	45.0	11
TTATCCG	20	7.029445E-4	45.0	1
ACGGGCC	20	7.029445E-4	45.0	5
CGTTAGA	20	7.029445E-4	45.0	11
TGTTGCG	25	3.8876206E-5	45.0	1
TACGCGG	20	7.029445E-4	45.0	2
GCTAGCG	25	3.8876206E-5	45.0	1
GCGGCTA	20	7.029445E-4	45.0	24
CTTTCGT	20	7.029445E-4	45.0	20
ATAACGG	45	3.8380676E-10	45.0	2
CCAACGG	20	7.029445E-4	45.0	2
CGCCGTT	20	7.029445E-4	45.0	26