##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551574_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 498933 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.05058194186394 33.0 31.0 34.0 30.0 34.0 2 32.154818382428104 33.0 31.0 34.0 30.0 34.0 3 32.08036149142269 33.0 31.0 34.0 30.0 34.0 4 35.7383817065618 37.0 35.0 37.0 33.0 37.0 5 35.81552032036365 37.0 35.0 37.0 35.0 37.0 6 35.74009937205997 37.0 35.0 37.0 35.0 37.0 7 36.07695221602901 37.0 35.0 37.0 35.0 37.0 8 35.93885351339759 37.0 35.0 37.0 35.0 37.0 9 37.80714043769404 39.0 38.0 39.0 35.0 39.0 10 37.416085927369004 39.0 37.0 39.0 34.0 39.0 11 37.414061607470344 39.0 37.0 39.0 34.0 39.0 12 37.424121074372714 39.0 37.0 39.0 35.0 39.0 13 37.53123766116894 39.0 37.0 39.0 35.0 39.0 14 38.62578743037643 40.0 38.0 41.0 35.0 41.0 15 38.68563113684603 40.0 38.0 41.0 35.0 41.0 16 38.47350044996021 40.0 38.0 41.0 34.0 41.0 17 38.50184894565002 40.0 38.0 41.0 34.0 41.0 18 38.2678896765698 40.0 38.0 41.0 34.0 41.0 19 38.02951097642369 40.0 37.0 41.0 34.0 41.0 20 38.25830121479237 40.0 37.0 41.0 34.0 41.0 21 38.1334287369246 40.0 37.0 41.0 34.0 41.0 22 38.31793246788647 40.0 37.0 41.0 34.0 41.0 23 38.346110600020445 40.0 37.0 41.0 35.0 41.0 24 38.238707401595 40.0 37.0 41.0 34.0 41.0 25 37.89504001539285 40.0 36.0 41.0 34.0 41.0 26 38.114424181202686 40.0 37.0 41.0 34.0 41.0 27 38.2035463679492 40.0 37.0 41.0 34.0 41.0 28 38.11457650626437 40.0 37.0 41.0 34.0 41.0 29 38.127638380303566 40.0 37.0 41.0 34.0 41.0 30 37.84194671428829 40.0 36.0 41.0 34.0 41.0 31 37.69717978165405 40.0 36.0 41.0 33.0 41.0 32 37.61276163332552 40.0 36.0 41.0 33.0 41.0 33 37.47982394429713 40.0 36.0 41.0 33.0 41.0 34 37.305111107102555 40.0 36.0 41.0 33.0 41.0 35 37.21617531812889 40.0 36.0 41.0 33.0 41.0 36 37.0694882880066 40.0 36.0 41.0 32.0 41.0 37 37.06258355330275 40.0 36.0 41.0 32.0 41.0 38 36.889864971849924 40.0 35.0 41.0 31.0 41.0 39 36.843163310504615 40.0 35.0 41.0 31.0 41.0 40 36.80917077042408 40.0 35.0 41.0 31.0 41.0 41 36.67213433467018 39.0 35.0 41.0 31.0 41.0 42 36.769049150887994 40.0 35.0 41.0 31.0 41.0 43 36.72748044326593 40.0 35.0 41.0 31.0 41.0 44 36.72596120120337 40.0 35.0 41.0 31.0 41.0 45 36.68977999049973 39.0 35.0 41.0 31.0 41.0 46 36.6055382185584 39.0 35.0 41.0 31.0 41.0 47 36.571605806791695 39.0 35.0 41.0 31.0 41.0 48 36.53458279969455 39.0 35.0 41.0 31.0 41.0 49 36.5157806759625 39.0 35.0 41.0 31.0 41.0 50 36.39343158299812 39.0 35.0 41.0 31.0 41.0 51 35.544237402617185 38.0 35.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 6.0 9 12.0 10 16.0 11 17.0 12 9.0 13 12.0 14 24.0 15 29.0 16 31.0 17 56.0 18 92.0 19 190.0 20 361.0 21 560.0 22 881.0 23 1356.0 24 2195.0 25 3842.0 26 5419.0 27 6106.0 28 5910.0 29 5647.0 30 6011.0 31 6986.0 32 9023.0 33 12850.0 34 23283.0 35 33636.0 36 35406.0 37 53789.0 38 110902.0 39 174209.0 40 66.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.5061721714138 20.86833302267038 25.167707888634343 15.45778691728148 2 35.82084167613688 24.104038017128552 24.99052979057308 15.084590516161489 3 30.34655955809698 23.10109774258267 31.231848765265074 15.320493934055273 4 26.418577243838353 24.490262219576575 31.36914174849128 17.722018788093795 5 24.53876572605941 27.884906390236765 28.836737598034208 18.739590285669617 6 25.10798043023813 32.35704994458174 27.422519656947923 15.112449968232209 7 77.30035896603351 4.744123960531775 13.398993452026625 4.556523621408084 8 78.10527666039327 4.621863055760994 12.170972856074863 5.101887427770864 9 71.46390397107427 7.50361270952212 14.395920895190336 6.636562424213271 10 32.54364814514174 34.31021800522315 20.345417120134368 12.800716729500754 11 24.110050848510724 23.673318862452476 33.74360886131004 18.473021427726767 12 23.054999368652705 20.496138760114082 36.802536613132425 19.646325258100784 13 22.664566184237163 22.70084360024292 37.19717877951549 17.43741143600443 14 19.789029789570943 27.480042410504012 33.28623282083967 19.444694979085366 15 16.79043077928299 25.406016439080997 38.7436790110095 19.059873770626517 16 19.750146813299583 23.7464749776022 36.22650736672058 20.276870842377633 17 19.527872479872048 23.411560269615357 33.49026823240796 23.570299018104635 18 19.912292832905422 23.77273100797101 35.32398137625693 20.990994782866636 19 20.29551061966236 25.606043296394503 33.4704258888468 20.628020195096337 20 21.737988868244834 26.47770341909635 32.72142752634121 19.062880186317603 21 20.75749649752572 26.997212050515802 33.47944513592005 18.765846316038427 22 18.741193707371533 24.830388048094633 32.13156876775038 24.296849476783457 23 17.962932898806052 27.116666967308234 32.50376303030668 22.41663710357904 24 19.526870341308353 25.876821136304873 32.87375258802284 21.722555934363932 25 18.89752732330794 27.26778946271343 31.523671515013035 22.311011698965594 26 17.95952562768949 27.792308786951352 32.38190298096137 21.866262604397786 27 21.046914114720813 26.14058400626938 32.56048407301181 20.252017805997998 28 18.71213168902438 25.94075757666861 34.34629499351616 21.00081574079085 29 20.201910877813255 24.007431859588362 34.595426640450725 21.195230622147662 30 23.4662770351931 23.889981219923317 32.37729314356837 20.266448601315208 31 23.913230834601038 25.508435000290618 29.606780870377385 20.971553294730956 32 22.717879955825733 25.581190260014875 31.066696329968153 20.634233454191246 33 24.620941088282393 24.209462994029256 29.70899900387427 21.46059691381408 34 23.39191835376694 23.638644868148628 31.17933670452746 21.79010007355697 35 22.062080479743774 22.214004685999925 31.799660475454623 23.924254358801683 36 24.91396640430679 23.84628797854622 31.52507450900221 19.71467110814478 37 24.516718677658123 23.680333832398336 31.965414193889764 19.837533296053778 38 22.768788594861434 25.0857329541241 30.259974786193737 21.885503664820728 39 23.996809190813195 22.606843002968336 31.40622087534799 21.990126930870478 40 24.376619706453575 22.404611440814698 31.93555046469165 21.28321838804008 41 21.319696231758574 23.904412015240524 30.903748599511356 23.872143153489546 42 22.170912727761042 23.856710219608644 31.84676098794828 22.12561606468203 43 23.252420665700605 23.347824256964362 32.01932924861654 21.380425828718487 44 23.32637849170129 23.643855988679842 30.860255785846995 22.169509733771868 45 23.43861801083512 22.484782525910294 30.1132617004688 23.963337762785784 46 24.537964015208455 23.90721800321887 30.25456323794978 21.30025474362289 47 21.29684747250633 24.09261363750243 32.754698526655886 21.855840363335357 48 21.312681261812706 23.255026225966212 31.718086396369856 23.714206115851226 49 22.660758057695123 21.275201279530517 33.27240330866068 22.79163735411368 50 21.07958383189727 21.096620187480084 32.871547883182714 24.952248097439934 51 20.97275586100739 21.580853541457472 30.311885563793133 27.134505033742006 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 261.0 1 507.0 2 753.0 3 5264.0 4 9775.0 5 6220.0 6 2665.0 7 2700.0 8 2735.0 9 2737.5 10 2740.0 11 2771.0 12 2802.0 13 2808.5 14 2815.0 15 2674.0 16 2533.0 17 2477.0 18 2421.0 19 2351.5 20 2282.0 21 2344.0 22 2406.0 23 2637.0 24 2868.0 25 3232.0 26 4247.0 27 4898.0 28 5718.0 29 6538.0 30 7160.0 31 7782.0 32 8887.0 33 9992.0 34 11794.5 35 13597.0 36 14318.5 37 15040.0 38 16139.5 39 17239.0 40 18875.5 41 20512.0 42 23007.5 43 25503.0 44 28288.0 45 31073.0 46 33275.5 47 35478.0 48 43618.0 49 51758.0 50 54649.0 51 57540.0 52 54914.5 53 52289.0 54 42923.0 55 33557.0 56 27276.5 57 20996.0 58 18200.5 59 15405.0 60 14046.5 61 12688.0 62 11190.5 63 9693.0 64 7834.0 65 5975.0 66 4756.5 67 3538.0 68 2874.0 69 2210.0 70 1943.0 71 1676.0 72 1556.5 73 1437.0 74 1186.0 75 671.5 76 408.0 77 308.0 78 208.0 79 188.5 80 169.0 81 124.5 82 80.0 83 63.5 84 47.0 85 30.0 86 13.0 87 7.5 88 2.0 89 3.0 90 4.0 91 2.0 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 498933.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.830309952912984 #Duplication Level Percentage of deduplicated Percentage of total 1 73.59330693540691 27.84057611826305 2 10.185047337647742 7.7060699533661055 3 3.7038473757898065 4.203530827332353 4 2.110630389464014 3.1938320731784438 5 1.4177934643271943 2.681778310235602 6 1.0694269844388162 2.427405257599768 7 0.8614646858341719 2.281263325501687 8 0.7649431067364716 2.3150427859347937 9 0.6470061496362439 2.2028798863961914 >10 5.5258978595254815 36.70500276586707 >50 0.07652661855421589 2.000181297560112 >100 0.038263309277105785 2.7022250297019124 >500 0.0015943045532127408 0.4290267251978186 >1k 0.0037200439574963957 1.9718341709185592 >5k 5.314348510709137E-4 1.3393514729465172 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6662 1.3352494222671178 No Hit GCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGC 2145 0.4299174438251228 No Hit CCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGC 1686 0.3379211236779287 No Hit CTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGCT 1484 0.29743472570465374 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGC 1224 0.24532352039251765 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCG 1135 0.22748545395874795 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCC 1106 0.2216730502893174 No Hit GAATCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTC 1028 0.20603968869567657 No Hit CGCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTG 846 0.1695618449771813 No Hit TCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGC 715 0.14330581460837427 No Hit CGTTCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTC 573 0.1148450793994384 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.00427712738985E-4 0.0 0.0 0.307255683628864 0.0 2 2.00427712738985E-4 0.0 0.0 1.3562943321047114 0.0 3 2.00427712738985E-4 0.0 0.0 1.869589704429252 0.0 4 2.00427712738985E-4 0.0 0.0 2.565474723059008 0.0 5 2.00427712738985E-4 0.0 0.0 4.405601553715629 0.0 6 2.00427712738985E-4 0.0 0.0 5.533207865585159 0.0 7 2.00427712738985E-4 0.0 0.0 6.645782098999264 0.0 8 2.00427712738985E-4 0.0 0.0 8.36665444057619 0.0 9 2.00427712738985E-4 0.0 0.0 9.195222605039154 0.0 10 2.00427712738985E-4 0.0 0.0 11.013302387294486 0.0 11 2.00427712738985E-4 0.0 0.0 13.29316761970044 0.0 12 2.00427712738985E-4 0.0 0.0 15.249342096032935 0.0 13 2.00427712738985E-4 0.0 0.0 15.955849783437856 0.0 14 2.00427712738985E-4 0.0 0.0 16.246269539196646 0.0 15 2.00427712738985E-4 0.0 0.0 16.7411255619492 0.0 16 2.00427712738985E-4 0.0 0.0 17.685340516662556 0.0 17 2.00427712738985E-4 0.0 0.0 18.88369781112895 0.0 18 2.00427712738985E-4 0.0 0.0 20.203313871802425 0.0 19 2.00427712738985E-4 0.0 0.0 20.991195210579377 0.0 20 4.0085542547797E-4 0.0 0.0 21.685075952081743 0.0 21 4.0085542547797E-4 0.0 0.0 22.414632826451648 0.0 22 4.0085542547797E-4 0.0 0.0 23.24720954516939 0.0 23 4.0085542547797E-4 0.0 0.0 24.08078840245083 0.0 24 4.0085542547797E-4 0.0 0.0 24.692493781730214 0.0 25 4.0085542547797E-4 0.0 0.0 25.222023798786612 0.0 26 4.0085542547797E-4 0.0 0.0 25.715075972124513 0.0 27 4.0085542547797E-4 0.0 0.0 26.20552258519681 0.0 28 4.0085542547797E-4 0.0 0.0 26.72242565635065 0.0 29 4.0085542547797E-4 0.0 0.0 27.22008766708155 0.0 30 4.0085542547797E-4 0.0 0.0 27.8187652450329 0.0 31 4.0085542547797E-4 0.0 0.0 28.347092695812865 0.0 32 4.0085542547797E-4 0.0 0.0 28.840144869150766 0.0 33 4.0085542547797E-4 0.0 0.0 29.32558078940459 0.0 34 4.0085542547797E-4 0.0 0.0 29.801596607159677 0.0 35 4.0085542547797E-4 0.0 0.0 30.308077437251093 0.0 36 4.0085542547797E-4 0.0 0.0 30.805739447981992 0.0 37 4.0085542547797E-4 0.0 0.0 31.3023993201492 0.0 38 4.0085542547797E-4 0.0 0.0 31.77981813189346 0.0 39 4.0085542547797E-4 0.0 0.0 32.23979973262943 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGATCGT 30 2.1630221E-6 45.000004 28 CGTATGG 35 1.2100827E-7 45.000004 2 AAACACG 35 1.2100827E-7 45.000004 40 CGCACCC 30 2.1630221E-6 45.000004 31 GCTACGA 70 0.0 45.000004 10 TGATCCG 20 7.029445E-4 45.0 1 GTTTCGC 20 7.029445E-4 45.0 39 ACGCATA 20 7.029445E-4 45.0 33 GCAACGA 20 7.029445E-4 45.0 11 TTATCCG 20 7.029445E-4 45.0 1 ACGGGCC 20 7.029445E-4 45.0 5 CGTTAGA 20 7.029445E-4 45.0 11 TGTTGCG 25 3.8876206E-5 45.0 1 TACGCGG 20 7.029445E-4 45.0 2 GCTAGCG 25 3.8876206E-5 45.0 1 GCGGCTA 20 7.029445E-4 45.0 24 CTTTCGT 20 7.029445E-4 45.0 20 ATAACGG 45 3.8380676E-10 45.0 2 CCAACGG 20 7.029445E-4 45.0 2 CGCCGTT 20 7.029445E-4 45.0 26 >>END_MODULE