SRR3551570_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551570_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	591613
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5291	0.8943346410575833	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTC	2170	0.36679383313077973	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGC	2096	0.3542856563327716	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCG	2085	0.3524263327546893	No Hit
GCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTGC	1770	0.29918206665506	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCC	847	0.14316791551233662	No Hit
CTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTGCT	842	0.1423227684313901	Illumina Single End Adapter 2 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTGC	816	0.13792800361046834	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	794	0.13420935645430374	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	755	0.12761720922292108	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	607	0.10260085562690474	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTACGG	30	2.163708E-6	45.000004	2
ATTAGCG	25	3.888502E-5	45.0	1
CGACGGT	55	1.8189894E-12	45.0	28
ACGTTAG	25	3.888502E-5	45.0	1
CGCATGT	20	7.0305075E-4	45.0	38
TTATGCG	25	3.888502E-5	45.0	1
TAACGAG	20	7.0305075E-4	45.0	1
TATTGCG	20	7.0305075E-4	45.0	1
TAACACG	25	3.888502E-5	45.0	1
CGTGTAC	80	0.0	45.0	18
TATAGCG	20	7.0305075E-4	45.0	1
TTACCGG	40	6.8048394E-9	45.0	39
GATTACG	25	3.888502E-5	45.0	1
ATCGCAT	20	7.0305075E-4	45.0	10
GCGTAAG	35	1.210592E-7	45.0	1
CCCTCGT	85	0.0	42.35294	14
AACACGG	75	0.0	42.000004	2
CGTTTTT	2355	0.0	41.17834	1
CGAAAAT	50	1.0804797E-9	40.5	23
TGCGATG	50	1.0804797E-9	40.5	1