##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551570_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 591613 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.327886642112325 33.0 31.0 34.0 30.0 34.0 2 32.44599763696876 34.0 31.0 34.0 31.0 34.0 3 32.44831672055888 34.0 31.0 34.0 30.0 34.0 4 35.963244553449634 37.0 35.0 37.0 35.0 37.0 5 36.051837941356936 37.0 35.0 37.0 35.0 37.0 6 36.07518766490932 37.0 35.0 37.0 35.0 37.0 7 36.20852482957609 37.0 37.0 37.0 35.0 37.0 8 36.10382124801179 37.0 37.0 37.0 35.0 37.0 9 37.953469582311406 39.0 38.0 39.0 35.0 39.0 10 37.694136200522976 39.0 37.0 39.0 35.0 39.0 11 37.64565687366572 39.0 37.0 39.0 35.0 39.0 12 37.54617799135583 39.0 37.0 39.0 35.0 39.0 13 37.49702761771631 39.0 37.0 39.0 35.0 39.0 14 38.80506682577969 40.0 38.0 41.0 35.0 41.0 15 38.84599053773328 40.0 38.0 41.0 35.0 41.0 16 38.884297674324266 40.0 38.0 41.0 35.0 41.0 17 38.81411158983998 40.0 38.0 41.0 35.0 41.0 18 38.7333375027256 40.0 38.0 41.0 35.0 41.0 19 38.63316221922101 40.0 37.0 41.0 35.0 41.0 20 38.504167420256145 40.0 37.0 41.0 35.0 41.0 21 38.423746604621606 40.0 37.0 41.0 35.0 41.0 22 38.40583624768218 40.0 37.0 41.0 35.0 41.0 23 38.36195790153361 40.0 37.0 41.0 35.0 41.0 24 38.27910982348258 40.0 37.0 41.0 34.0 41.0 25 38.176715183743426 40.0 36.0 41.0 34.0 41.0 26 38.169222109723755 40.0 36.0 41.0 34.0 41.0 27 38.14686627913856 40.0 36.0 41.0 34.0 41.0 28 38.05510020908939 40.0 36.0 41.0 34.0 41.0 29 38.001779879752476 40.0 36.0 41.0 34.0 41.0 30 37.84583672096455 40.0 36.0 41.0 34.0 41.0 31 37.80137353303596 40.0 36.0 41.0 34.0 41.0 32 37.64554024336855 40.0 36.0 41.0 33.0 41.0 33 37.499691521315455 40.0 35.0 41.0 33.0 41.0 34 37.34725065203097 40.0 35.0 41.0 33.0 41.0 35 37.251290962166145 40.0 35.0 41.0 33.0 41.0 36 37.12660134243162 40.0 35.0 41.0 33.0 41.0 37 37.07699627966255 40.0 35.0 41.0 32.0 41.0 38 36.88461713992086 40.0 35.0 41.0 32.0 41.0 39 36.85530236827115 39.0 35.0 41.0 32.0 41.0 40 36.76637261182564 39.0 35.0 41.0 31.0 41.0 41 36.672899344672956 39.0 35.0 41.0 31.0 41.0 42 36.59078316399403 39.0 35.0 41.0 31.0 41.0 43 36.53652810198559 39.0 35.0 41.0 31.0 41.0 44 36.50918590362281 39.0 35.0 41.0 31.0 41.0 45 36.37936962169526 39.0 35.0 41.0 31.0 41.0 46 36.334608941994176 39.0 35.0 41.0 31.0 41.0 47 36.258462880295056 39.0 35.0 41.0 31.0 41.0 48 36.190536719105225 38.0 35.0 41.0 31.0 41.0 49 36.13464376205391 38.0 35.0 41.0 31.0 41.0 50 36.04335097437007 38.0 35.0 41.0 31.0 41.0 51 35.22716708388761 37.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 8.0 9 9.0 10 19.0 11 18.0 12 8.0 13 17.0 14 15.0 15 35.0 16 55.0 17 82.0 18 110.0 19 232.0 20 372.0 21 676.0 22 1041.0 23 1625.0 24 2396.0 25 3503.0 26 5038.0 27 6316.0 28 6526.0 29 6675.0 30 7142.0 31 8898.0 32 10916.0 33 15347.0 34 30869.0 35 45575.0 36 41865.0 37 62349.0 38 113458.0 39 220161.0 40 257.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.561945055297976 19.664882279463093 23.527035409972395 14.246137255266532 2 33.46072517000134 25.34528483992069 23.70738979704638 17.48660019303159 3 31.90159783507124 24.142809573150014 27.62329428190388 16.33229830987487 4 28.89507160931217 23.81370929982945 28.703899339602074 18.587319751256313 5 26.388196337808665 28.689362809809793 25.249952249189928 19.672488603191614 6 26.542858253621876 33.80774256143796 24.818082090826266 14.831317094113889 7 76.71214121393545 6.2567928696631085 12.256153938469911 4.774911977931519 8 76.65027644761018 7.217218012450707 10.835292665982662 5.297212873956455 9 70.39314551911468 7.993739150424347 13.314109054398738 8.299006276062224 10 39.36796520698497 25.206342659813085 19.510896481314642 15.914795651887298 11 30.753211981481137 23.654821648611506 25.1666207470086 20.425345622898753 12 26.458681604359608 21.64894956669309 30.662781243819865 21.22958758512744 13 24.277864076685265 22.361577585347177 32.48390417384338 20.876654164124183 14 21.616495918784747 26.17741665582061 30.21468426150203 21.991403163892613 15 21.027597432781228 23.342286258077493 33.96206641841879 21.668049890722482 16 23.383022347379114 22.537875266432618 31.23257940579399 22.84652298039428 17 23.288027815480728 23.17444004780152 29.11126023261828 24.42627190409947 18 23.952144391688485 22.966871924721058 30.143353847870145 22.937629835720312 19 24.909188946152298 24.41410178613384 27.819199375267278 22.857509892446583 20 25.464788637166524 24.75959791282477 28.94966811074131 20.825945339267392 21 25.28291298534684 25.545246639272634 27.944450172663547 21.22739020271698 22 22.936953718055552 23.413954730541757 28.024908174769653 25.624183376633034 23 23.000339749126542 24.736947971055404 28.376151301611017 23.88656097820704 24 23.274674491601775 24.428131227677554 28.874619049953264 23.42257523076741 25 23.843796535911142 25.600519258366532 27.27137503739776 23.28430916832456 26 23.032793397034887 24.819096267323403 28.235518827341522 23.912591508300192 27 24.513829141685527 24.12032866079684 28.129030295142265 23.236811902375372 28 21.92396042683308 25.76566099798348 29.037225348327368 23.27315322685607 29 23.727842356405286 24.453992728354514 27.518834102698893 24.299330812541307 30 23.534472704284724 24.628769144694253 27.70544257817188 24.131315572849143 31 24.977983918541344 25.359990399129163 25.25637536700512 24.405650315324376 32 24.779036295686538 25.54288022744598 25.648861671396674 24.029221805470808 33 23.469396379051847 25.579559610759063 25.322465868735133 25.628578141453957 34 23.22430372557736 25.84240035293342 27.11468476859028 23.81861115289894 35 24.919161681707465 23.904140037490723 26.16288012602833 25.013818154773475 36 24.593949084959256 27.060088267161138 26.27765109962087 22.06831154825874 37 22.71366585926949 27.17181671126226 26.89646779228989 23.21804963717836 38 22.5823300028904 28.130889618720346 25.900039383853972 23.38674099453528 39 24.11542680772735 24.154134544034697 27.913855848333284 23.81658279990467 40 23.339412758002275 24.179827015295473 29.390834886995382 23.08992533970687 41 22.069325724755878 24.75452703033909 28.222672591711135 24.953474653193897 42 22.793954831959407 24.586680820063116 28.312934299956222 24.30643004802126 43 23.790552269811517 23.076572015827914 28.278283269637416 24.854592444723156 44 23.33146837544138 23.782776916666805 27.680088165743484 25.20566654214833 45 23.030765044040614 23.577575205412998 27.403217982025414 25.988441768520975 46 24.198589280492484 24.74776585369152 27.409810129256794 23.643834736559203 47 22.423273322256275 24.299668871373687 29.846538193041734 23.430519613328308 48 22.44119044037234 24.59749870269923 28.022541762943003 24.938769093985428 49 22.452177352424645 23.67138653139806 30.24629276232943 23.63014335384787 50 21.681572244017627 22.96974542479628 29.96063304896951 25.388049282216585 51 22.476010500107332 23.3674716410897 27.303490626473724 26.85302723232924 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 232.0 1 797.0 2 1362.0 3 4920.5 4 8479.0 5 5548.0 6 2617.0 7 2472.5 8 2328.0 9 2281.5 10 2235.0 11 2257.0 12 2279.0 13 2202.0 14 2125.0 15 2052.0 16 1979.0 17 1833.0 18 1687.0 19 1592.0 20 1497.0 21 1589.0 22 1681.0 23 1920.0 24 2159.0 25 2640.5 26 3618.0 27 4114.0 28 5310.0 29 6506.0 30 7381.0 31 8256.0 32 8642.5 33 9029.0 34 9621.5 35 10214.0 36 11205.5 37 12197.0 38 13703.0 39 15209.0 40 17381.0 41 19553.0 42 22724.5 43 25896.0 44 29352.5 45 32809.0 46 41411.5 47 50014.0 48 51688.0 49 53362.0 50 52692.5 51 52023.0 52 46559.0 53 41095.0 54 38461.0 55 35827.0 56 33789.0 57 31751.0 58 31181.5 59 30612.0 60 29362.5 61 28113.0 62 25738.5 63 23364.0 64 21111.0 65 18858.0 66 16726.0 67 14594.0 68 12522.0 69 10450.0 70 9283.0 71 8116.0 72 7196.0 73 6276.0 74 5100.5 75 3285.5 76 2646.0 77 2090.5 78 1535.0 79 1168.0 80 801.0 81 654.5 82 508.0 83 309.5 84 111.0 85 78.0 86 45.0 87 30.5 88 16.0 89 8.0 90 0.0 91 0.0 92 0.0 93 0.5 94 1.0 95 3.0 96 5.0 97 2.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 591613.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.609567180627508 #Duplication Level Percentage of deduplicated Percentage of total 1 72.44599934237779 22.175406838382088 2 8.796562187483142 5.385179224726658 3 3.2721089798727254 3.004735189252462 4 1.7717998915915096 2.1693611124919543 5 1.2803155912686526 1.9594953051671324 6 1.0520664910157094 1.932197996113944 7 0.8709611605919076 1.8661820909798712 8 0.8130263668437385 1.9909108156419935 9 0.7379579689251401 2.0329716623664154 >10 8.804903948951495 49.15324608287423 >50 0.09602002264940075 2.0164479654864746 >100 0.051062671004304915 3.0536385316078456 >500 0.004440232261243905 0.9816358871497793 >1k 0.0022201161306219523 1.379692807120692 >5k 5.550290326554881E-4 0.8988984906385398 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5291 0.8943346410575833 No Hit GAATCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTC 2170 0.36679383313077973 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGC 2096 0.3542856563327716 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCG 2085 0.3524263327546893 No Hit GCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTGC 1770 0.29918206665506 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCC 847 0.14316791551233662 No Hit CTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTGCT 842 0.1423227684313901 Illumina Single End Adapter 2 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTGC 816 0.13792800361046834 No Hit CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA 794 0.13420935645430374 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 755 0.12761720922292108 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG 607 0.10260085562690474 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.3805883237859885E-4 0.0 0.0 0.1472246215008798 0.0 2 3.3805883237859885E-4 0.0 0.0 0.7367992251691562 0.0 3 3.3805883237859885E-4 0.0 0.0 0.9974425849330559 0.0 4 3.3805883237859885E-4 0.0 0.0 1.4230586548977118 0.0 5 3.3805883237859885E-4 0.0 0.0 2.7555175427179592 0.0 6 3.3805883237859885E-4 0.0 0.0 3.490964532557601 0.0 7 3.3805883237859885E-4 0.0 0.0 4.247878258253284 0.0 8 3.3805883237859885E-4 0.0 0.0 5.3957570235948165 0.0 9 3.3805883237859885E-4 0.0 0.0 5.887294565873299 0.0 10 5.070882485678983E-4 0.0 0.0 7.11765968631521 0.0 11 5.070882485678983E-4 0.0 0.0 8.259115333841548 0.0 12 5.070882485678983E-4 0.0 0.0 9.53004751416889 0.0 13 5.070882485678983E-4 0.0 0.0 9.904447671028189 0.0 14 5.070882485678983E-4 0.0 0.0 10.062659204581374 0.0 15 5.070882485678983E-4 0.0 0.0 10.40122512520854 0.0 16 5.070882485678983E-4 0.0 0.0 10.958008022136092 0.0 17 5.070882485678983E-4 0.0 0.0 11.609109333297274 0.0 18 5.070882485678983E-4 0.0 0.0 12.348951087957838 0.0 19 5.070882485678983E-4 0.0 0.0 12.837615130161103 0.0 20 5.070882485678983E-4 0.0 0.0 13.268809170860004 0.0 21 5.070882485678983E-4 0.0 0.0 13.772009742855548 0.0 22 5.070882485678983E-4 0.0 0.0 14.301409874360434 0.0 23 5.070882485678983E-4 0.0 0.0 14.821682417391099 0.0 24 5.070882485678983E-4 0.0 0.0 15.29175322381354 0.0 25 5.070882485678983E-4 0.0 0.0 15.694212263760262 0.0 26 5.070882485678983E-4 0.0 0.0 16.057456479151067 0.0 27 5.070882485678983E-4 0.0 0.0 16.422729047536144 0.0 28 5.070882485678983E-4 0.0 0.0 16.78817064533741 0.0 29 5.070882485678983E-4 0.0 0.0 17.184882685133694 0.0 30 5.070882485678983E-4 0.0 0.0 17.64227628534194 0.0 31 5.070882485678983E-4 0.0 0.0 18.043214060542958 0.0 32 5.070882485678983E-4 0.0 0.0 18.453617483050575 0.0 33 5.070882485678983E-4 0.0 0.0 18.861823523147734 0.0 34 5.070882485678983E-4 0.0 0.0 19.263944504262078 0.0 35 5.070882485678983E-4 0.0 0.0 19.67502404443445 0.0 36 6.761176647571977E-4 0.0 0.0 20.077483084381175 0.0 37 6.761176647571977E-4 0.0 0.0 20.460503741466127 0.0 38 6.761176647571977E-4 0.0 0.0 20.851975869360544 0.0 39 6.761176647571977E-4 0.0 0.0 21.26271735070054 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATTACGG 30 2.163708E-6 45.000004 2 ATTAGCG 25 3.888502E-5 45.0 1 CGACGGT 55 1.8189894E-12 45.0 28 ACGTTAG 25 3.888502E-5 45.0 1 CGCATGT 20 7.0305075E-4 45.0 38 TTATGCG 25 3.888502E-5 45.0 1 TAACGAG 20 7.0305075E-4 45.0 1 TATTGCG 20 7.0305075E-4 45.0 1 TAACACG 25 3.888502E-5 45.0 1 CGTGTAC 80 0.0 45.0 18 TATAGCG 20 7.0305075E-4 45.0 1 TTACCGG 40 6.8048394E-9 45.0 39 GATTACG 25 3.888502E-5 45.0 1 ATCGCAT 20 7.0305075E-4 45.0 10 GCGTAAG 35 1.210592E-7 45.0 1 CCCTCGT 85 0.0 42.35294 14 AACACGG 75 0.0 42.000004 2 CGTTTTT 2355 0.0 41.17834 1 CGAAAAT 50 1.0804797E-9 40.5 23 TGCGATG 50 1.0804797E-9 40.5 1 >>END_MODULE