##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551569_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 434546 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.318578470403594 33.0 31.0 34.0 30.0 34.0 2 32.435465980586635 34.0 31.0 34.0 31.0 34.0 3 32.44859692644737 34.0 31.0 34.0 30.0 34.0 4 35.959224109760534 37.0 35.0 37.0 35.0 37.0 5 36.04205308528901 37.0 35.0 37.0 35.0 37.0 6 36.064761843395175 37.0 35.0 37.0 35.0 37.0 7 36.1948217219811 37.0 37.0 37.0 35.0 37.0 8 36.09412812452537 37.0 37.0 37.0 35.0 37.0 9 37.94186346209607 39.0 38.0 39.0 35.0 39.0 10 37.67822509009403 39.0 37.0 39.0 35.0 39.0 11 37.59115260524778 39.0 37.0 39.0 35.0 39.0 12 37.485246671238485 39.0 37.0 39.0 35.0 39.0 13 37.423837752504916 39.0 37.0 39.0 35.0 39.0 14 38.69045164378455 40.0 38.0 41.0 35.0 41.0 15 38.74751809934967 40.0 38.0 41.0 35.0 41.0 16 38.79758874779655 40.0 38.0 41.0 35.0 41.0 17 38.71247002618825 40.0 38.0 41.0 35.0 41.0 18 38.64977240614342 40.0 38.0 41.0 35.0 41.0 19 38.57809069695728 40.0 37.0 41.0 35.0 41.0 20 38.48218370437192 40.0 37.0 41.0 35.0 41.0 21 38.40049845125717 40.0 37.0 41.0 34.0 41.0 22 38.36726146368854 40.0 37.0 41.0 34.0 41.0 23 38.31486655037671 40.0 37.0 41.0 34.0 41.0 24 38.23959028503312 40.0 37.0 41.0 34.0 41.0 25 38.128789587293404 40.0 36.0 41.0 34.0 41.0 26 38.14192743691117 40.0 36.0 41.0 34.0 41.0 27 38.112450695668585 40.0 36.0 41.0 34.0 41.0 28 38.03517924454488 40.0 36.0 41.0 34.0 41.0 29 37.9863006448109 40.0 36.0 41.0 34.0 41.0 30 37.82724498672177 40.0 36.0 41.0 34.0 41.0 31 37.79199900585899 40.0 36.0 41.0 34.0 41.0 32 37.60569882129855 40.0 36.0 41.0 33.0 41.0 33 37.494099588996335 40.0 35.0 41.0 33.0 41.0 34 37.361358751432526 40.0 35.0 41.0 33.0 41.0 35 37.220954743571454 40.0 35.0 41.0 33.0 41.0 36 37.17001422173947 40.0 35.0 41.0 33.0 41.0 37 37.11836951669098 40.0 35.0 41.0 33.0 41.0 38 36.91190575911411 39.0 35.0 41.0 32.0 41.0 39 36.909151160061306 39.0 35.0 41.0 32.0 41.0 40 36.81115923285452 39.0 35.0 41.0 32.0 41.0 41 36.714522743276895 39.0 35.0 41.0 31.0 41.0 42 36.64195965444395 39.0 35.0 41.0 31.0 41.0 43 36.65587992985783 39.0 35.0 41.0 31.0 41.0 44 36.63725819591021 39.0 35.0 41.0 32.0 41.0 45 36.525836160038295 39.0 35.0 41.0 31.0 41.0 46 36.46991112563457 39.0 35.0 41.0 31.0 41.0 47 36.38354282400482 39.0 35.0 41.0 31.0 41.0 48 36.324876998062344 38.0 35.0 41.0 31.0 41.0 49 36.28415863913141 38.0 35.0 41.0 31.0 41.0 50 36.21011584504287 38.0 35.0 41.0 31.0 41.0 51 35.37563111845466 37.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 6.0 10 9.0 11 12.0 12 12.0 13 17.0 14 22.0 15 30.0 16 35.0 17 63.0 18 104.0 19 183.0 20 318.0 21 521.0 22 854.0 23 1222.0 24 1790.0 25 2431.0 26 3429.0 27 4077.0 28 4373.0 29 4533.0 30 5192.0 31 6360.0 32 8301.0 33 11579.0 34 23703.0 35 35976.0 36 29352.0 37 45373.0 38 83933.0 39 160524.0 40 210.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.063901175019446 20.54097840044552 24.048317094162645 13.346803330372389 2 32.36297192932393 25.422164742052626 24.90346246427306 17.31140086435038 3 31.737491542897644 24.303986229305988 26.962162809000656 16.99635941879571 4 28.725612478310698 24.82015712950988 27.779797765944224 18.674432626235195 5 25.478315299185816 28.984503366732177 24.80703999116319 20.730141342918817 6 26.15971611751115 34.43893166661297 24.49406967271589 14.907282543159988 7 77.0790664279501 6.515765879791783 11.566324393735071 4.838843298523057 8 77.3354259387959 7.201769202800164 9.94785362194106 5.514951236462883 9 71.1317098765148 8.114906131916989 12.316992907540284 8.436391084027928 10 40.72204093467665 24.50120355497462 19.149641234759958 15.627114275588774 11 31.72552503072172 24.13990693735531 24.669885351608343 19.464682680314628 12 28.196784690228423 20.650287886667925 29.96943936890456 21.183488054199096 13 25.223796790213232 22.49704289074114 32.08981327638501 20.189347042660614 14 21.634993763606154 26.36751920395079 29.663602932715982 22.333884099727072 15 20.87857211894713 23.921287964910505 33.52372361038877 21.67641630575359 16 22.768820792275157 22.93082895711846 31.432115357177377 22.868234893429005 17 22.753632526821097 23.475535386357254 29.045256428548416 24.725575658273232 18 23.00446903204724 23.327334735563092 30.41012919230645 23.258067040083212 19 24.434697362304565 24.78793959672854 27.820529932389203 22.956833108577687 20 25.53446585631901 24.420429597787116 28.730445108227897 21.314659437665977 21 24.933608869947026 25.73007230534857 28.27226576703042 21.064053057673988 22 23.322962356114196 23.728903269159076 27.230949082490692 25.71718529223603 23 23.166937447358855 25.314005882000984 27.502726984024704 24.016329686615457 24 23.529844941617228 23.767564308496684 28.588687963990004 24.113902785896084 25 22.83854873822334 25.711892411850528 27.287329764858036 24.162229085068095 26 21.264722261854903 25.339779908226056 28.262370381961865 25.133127447957175 27 23.64398705775683 24.580596760757203 27.634358617959894 24.141057563526072 28 21.439617439810746 25.771034597027704 28.606637732253894 24.18271023090766 29 22.91057793651305 24.597856153318638 26.68578240278359 25.805783507384717 30 22.95015947678727 25.286851104371 26.900489246247812 24.862500172593926 31 25.080428769336272 26.271787106543382 23.948672867774643 24.699111256345706 32 25.36049117929978 26.00990459007792 25.081349270272884 23.54825496034942 33 24.208944507601036 26.159485992277 25.2583155753361 24.373253924785867 34 23.441476851702696 24.755261813478896 26.97182806883506 24.83143326598335 35 24.042563963308833 24.03658070722087 26.78174462542516 25.13911070404514 36 23.692773607397147 26.639297105484804 26.25061558500136 23.417313702116694 37 24.233567907655345 26.9803427024987 26.965614687512947 21.82047470233301 38 22.47518099349666 27.740906601372465 27.045238018529684 22.738674386601186 39 25.154989345201656 24.757102815352113 27.492371348487847 22.59553649095838 40 23.573338610872035 23.44838060872727 29.50941902583386 23.468861754566834 41 21.457337082840482 24.262103436690246 28.50883450773911 25.77172497273016 42 21.15242114758852 24.79806510703125 29.147432032512093 24.902081712868142 43 23.141393546367933 23.761120801940415 28.021199136570125 25.076286515121527 44 22.866624016789938 24.473588526876323 27.34278994628877 25.316997510044963 45 23.247941529780505 23.840514007723 26.72628444399442 26.18526001850207 46 23.902187570475853 24.838106897773766 27.369944723918753 23.88976080783162 47 21.77030740128778 24.072250118514496 30.216133619915958 23.941308860281765 48 21.815181821947505 23.696685736377738 28.815591444864296 25.67254099681047 49 22.63856990974488 23.30616321402107 30.207849111486475 23.847417764747576 50 21.84118597340673 22.781247554919386 30.095317871985934 25.28224859968795 51 22.024365659792057 23.128966783723705 27.3977898772512 27.448877679233043 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 240.0 1 691.0 2 1142.0 3 2778.5 4 4415.0 5 2923.5 6 1432.0 7 1407.0 8 1382.0 9 1343.0 10 1304.0 11 1322.0 12 1340.0 13 1355.5 14 1371.0 15 1336.0 16 1301.0 17 1234.0 18 1167.0 19 1092.0 20 1017.0 21 1094.5 22 1172.0 23 1339.0 24 1506.0 25 1807.0 26 2687.0 27 3266.0 28 4200.0 29 5134.0 30 5599.0 31 6064.0 32 6555.5 33 7047.0 34 8075.5 35 9104.0 36 9842.5 37 10581.0 38 10877.5 39 11174.0 40 13377.0 41 15580.0 42 17683.0 43 19786.0 44 21778.5 45 23771.0 46 30281.0 47 36791.0 48 38073.0 49 39355.0 50 38308.0 51 37261.0 52 33798.5 53 30336.0 54 28419.0 55 26502.0 56 25103.5 57 23705.0 58 22849.5 59 21994.0 60 21546.0 61 21098.0 62 19205.5 63 17313.0 64 15929.5 65 14546.0 66 12508.5 67 10471.0 68 8975.5 69 7480.0 70 6456.0 71 5432.0 72 4823.0 73 4214.0 74 3427.5 75 2045.5 76 1450.0 77 1137.5 78 825.0 79 613.5 80 402.0 81 301.5 82 201.0 83 133.0 84 65.0 85 45.5 86 26.0 87 29.0 88 32.0 89 17.0 90 2.0 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 434546.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.23522483391689 #Duplication Level Percentage of deduplicated Percentage of total 1 73.2960532047958 22.16122648085736 2 8.976658345925518 5.428225666926291 3 3.095512542487761 2.8078055309498153 4 1.7267506407456563 2.0883477542021986 5 1.2003254004271044 1.8146054177887412 6 0.8921835128645994 1.6185221462744968 7 0.7793315295730976 1.6494284811762068 8 0.6730034536259523 1.6278728587506583 9 0.6546320717464438 1.7813653085471886 >10 8.534447989706576 51.27190858643104 >50 0.11686830419431818 2.325669431010928 >100 0.046594552652636664 2.790341416630986 >500 0.0038192256272653 0.7212577589917702 >1k 0.0038192256272653 1.9134231614623174 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2601 0.5985557340304594 No Hit GCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTTCTGC 1642 0.3778656344782831 TruSeq Adapter, Index 14 (95% over 21bp) GAATGATACCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCG 1431 0.3293092100721213 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGC 1341 0.30859793899840293 No Hit GAATCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTTC 1270 0.2922590473735807 No Hit CTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTTCTGCT 760 0.17489517795584358 TruSeq Adapter, Index 15 (95% over 23bp) CCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTTCTGC 692 0.15924666203347862 TruSeq Adapter, Index 14 (95% over 21bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCC 567 0.13048100776442542 No Hit CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA 564 0.12979063206196811 No Hit TCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTTCTGC 540 0.12426762644230992 TruSeq Adapter, Index 14 (95% over 21bp) AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 453 0.10424673107104887 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.602504683048515E-4 0.0 0.0 0.1813386845121115 0.0 2 4.602504683048515E-4 0.0 0.0 0.9580113497765484 0.0 3 4.602504683048515E-4 0.0 0.0 1.3071113299857782 0.0 4 4.602504683048515E-4 0.0 0.0 1.7797885609348607 0.0 5 4.602504683048515E-4 0.0 0.0 3.2321089136708196 0.0 6 4.602504683048515E-4 0.0 0.0 3.9742627938123927 0.0 7 4.602504683048515E-4 0.0 0.0 4.742650950647342 0.0 8 4.602504683048515E-4 0.0 0.0 5.914908893419799 0.0 9 4.602504683048515E-4 0.0 0.0 6.428548416048013 0.0 10 4.602504683048515E-4 0.0 0.0 7.661559420636711 0.0 11 4.602504683048515E-4 0.0 0.0 8.864193894317287 0.0 12 4.602504683048515E-4 0.0 0.0 10.089840891413107 0.0 13 4.602504683048515E-4 0.0 0.0 10.481974290408841 0.0 14 4.602504683048515E-4 0.0 0.0 10.644672830954606 0.0 15 4.602504683048515E-4 0.0 0.0 10.982956925158671 0.0 16 4.602504683048515E-4 0.0 0.0 11.58427416199896 0.0 17 4.602504683048515E-4 0.0 0.0 12.296972012169022 0.0 18 4.602504683048515E-4 0.0 0.0 13.103560957873274 0.0 19 4.602504683048515E-4 0.0 0.0 13.63630087493614 0.0 20 4.602504683048515E-4 0.0 0.0 14.090568087153029 0.0 21 4.602504683048515E-4 0.0 0.0 14.597764103224975 0.0 22 4.602504683048515E-4 0.0 0.0 15.153056293234778 0.0 23 4.602504683048515E-4 0.0 0.0 15.696151845834503 0.0 24 4.602504683048515E-4 0.0 0.0 16.171820704827567 0.0 25 4.602504683048515E-4 0.0 0.0 16.5639541038233 0.0 26 4.602504683048515E-4 0.0 0.0 16.951484998135985 0.0 27 4.602504683048515E-4 0.0 0.0 17.33809539151206 0.0 28 4.602504683048515E-4 0.0 0.0 17.71849240356602 0.0 29 4.602504683048515E-4 0.0 0.0 18.088994030551426 0.0 30 4.602504683048515E-4 0.0 0.0 18.520248719353074 0.0 31 4.602504683048515E-4 0.0 0.0 18.899034854767965 0.0 32 4.602504683048515E-4 0.0 0.0 19.309118022027587 0.0 33 4.602504683048515E-4 0.0 0.0 19.70700455187713 0.0 34 4.602504683048515E-4 0.0 0.0 20.106501958365744 0.0 35 4.602504683048515E-4 0.0 0.0 20.51612487515706 0.0 36 4.602504683048515E-4 0.0 0.0 20.911019776962622 0.0 37 4.602504683048515E-4 0.0 0.0 21.29118666378243 0.0 38 4.602504683048515E-4 0.0 0.0 21.6817091861391 0.0 39 4.602504683048515E-4 0.0 0.0 22.054512065466028 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTACGAG 35 1.2095916E-7 45.000004 1 CTCGTCA 20 7.028439E-4 45.0 33 CGATTCT 25 3.8867867E-5 45.0 10 TCGATTA 20 7.028439E-4 45.0 41 CGTTCGG 25 3.8867867E-5 45.0 45 TAGCACG 20 7.028439E-4 45.0 1 ATATCAC 80 0.0 45.0 30 AATTGCG 45 3.8380676E-10 45.0 1 TGATTCG 25 3.8867867E-5 45.0 15 AGCGACT 20 7.028439E-4 45.0 40 CGGTCTA 25 3.8867867E-5 45.0 31 CGATCGA 20 7.028439E-4 45.0 41 TATCGAG 20 7.028439E-4 45.0 1 TGCGTAG 20 7.028439E-4 45.0 1 TCGATGG 30 2.1623746E-6 44.999996 2 ATACGGG 75 0.0 42.0 3 ATATTAG 75 0.0 42.0 29 TAGTAAG 55 6.002665E-11 40.909092 1 ATGCGGG 160 0.0 40.78125 3 AATGCGG 50 1.0786607E-9 40.5 2 >>END_MODULE