SRR3551568_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551568_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	313605
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2143	0.6833436966885095	No Hit
CCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTCTGC	721	0.22990704867588205	Illumina Single End Adapter 1 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTCTGC	660	0.21045582819151482	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCC	499	0.15911736101146345	No Hit
CTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTCTGCT	487	0.15529089140798139	Illumina Single End Adapter 1 (95% over 22bp)
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	427	0.13615854339057093	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	386	0.12308477224534048	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	355	0.1131997257696784	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	334	0.10650340396358476	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGAAT	55	1.8189894E-12	45.000004	12
GCTACGA	55	1.8189894E-12	45.000004	10
TCGTTTA	20	7.025434E-4	45.0	38
CCGGGTT	20	7.025434E-4	45.0	5
AGATACG	40	6.7884685E-9	45.0	1
ATAGCGG	20	7.025434E-4	45.0	2
TACGGGA	80	0.0	45.0	4
TCTAGCG	20	7.025434E-4	45.0	1
TATTAGT	20	7.025434E-4	45.0	30
AACGATG	20	7.025434E-4	45.0	1
TAGGGTC	40	6.7884685E-9	45.0	5
TGTTACG	20	7.025434E-4	45.0	1
CATCGTT	20	7.025434E-4	45.0	36
CGTAAAC	20	7.025434E-4	45.0	38
GCGTAAG	20	7.025434E-4	45.0	1
GCATCGC	20	7.025434E-4	45.0	22
CTCGTAC	30	2.1604355E-6	44.999996	29
CCGATAA	30	2.1604355E-6	44.999996	11
TAGCATA	60	0.0	44.999996	30
TCGTACG	30	2.1604355E-6	44.999996	30