##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551568_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 313605 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.383941582564056 33.0 31.0 34.0 31.0 34.0 2 32.504858022034085 34.0 31.0 34.0 31.0 34.0 3 32.49495384321041 34.0 31.0 34.0 31.0 34.0 4 36.00611597391623 37.0 35.0 37.0 35.0 37.0 5 36.0822340205035 37.0 35.0 37.0 35.0 37.0 6 36.098075604661915 37.0 36.0 37.0 35.0 37.0 7 36.20682705951754 37.0 37.0 37.0 35.0 37.0 8 36.135402815643886 37.0 37.0 37.0 35.0 37.0 9 37.96115176735065 39.0 38.0 39.0 35.0 39.0 10 37.70968575118381 39.0 37.0 39.0 35.0 39.0 11 37.66939302625915 39.0 37.0 39.0 35.0 39.0 12 37.58496197445832 39.0 37.0 39.0 35.0 39.0 13 37.5583903317868 39.0 37.0 39.0 35.0 39.0 14 38.86345243219974 40.0 38.0 41.0 35.0 41.0 15 38.93566110234212 40.0 38.0 41.0 35.0 41.0 16 38.96531943049377 40.0 38.0 41.0 35.0 41.0 17 38.915371247269654 40.0 38.0 41.0 35.0 41.0 18 38.83687760080356 40.0 38.0 41.0 35.0 41.0 19 38.742915450965384 40.0 38.0 41.0 35.0 41.0 20 38.647030500151466 40.0 38.0 41.0 35.0 41.0 21 38.53525613430908 40.0 38.0 41.0 35.0 41.0 22 38.493263819135535 40.0 37.0 41.0 35.0 41.0 23 38.45796463704342 40.0 37.0 41.0 35.0 41.0 24 38.37502271966327 40.0 37.0 41.0 35.0 41.0 25 38.239508298655956 40.0 37.0 41.0 34.0 41.0 26 38.24441255719775 40.0 37.0 41.0 34.0 41.0 27 38.22970934774637 40.0 37.0 41.0 34.0 41.0 28 38.151371948789084 40.0 37.0 41.0 34.0 41.0 29 38.08545144369509 40.0 36.0 41.0 34.0 41.0 30 37.92658599193253 40.0 36.0 41.0 34.0 41.0 31 37.900916758342504 40.0 36.0 41.0 34.0 41.0 32 37.73380526458443 40.0 36.0 41.0 33.0 41.0 33 37.626428150061386 40.0 36.0 41.0 33.0 41.0 34 37.48927791329858 40.0 36.0 41.0 33.0 41.0 35 37.380523269718275 40.0 35.0 41.0 33.0 41.0 36 37.275037068924284 40.0 35.0 41.0 33.0 41.0 37 37.2012882447665 40.0 35.0 41.0 33.0 41.0 38 37.05946652636278 40.0 35.0 41.0 32.0 41.0 39 37.01063120804834 40.0 35.0 41.0 32.0 41.0 40 36.901991358556145 39.0 35.0 41.0 32.0 41.0 41 36.814591604087944 39.0 35.0 41.0 32.0 41.0 42 36.72467275713078 39.0 35.0 41.0 31.0 41.0 43 36.66986495751024 39.0 35.0 41.0 31.0 41.0 44 36.623376540552606 39.0 35.0 41.0 31.0 41.0 45 36.51334321837981 39.0 35.0 41.0 31.0 41.0 46 36.41541110632802 39.0 35.0 41.0 31.0 41.0 47 36.360198338674444 39.0 35.0 41.0 31.0 41.0 48 36.291599304858025 39.0 35.0 41.0 31.0 41.0 49 36.21789512284562 38.0 35.0 41.0 31.0 41.0 50 36.131984502798105 38.0 35.0 41.0 31.0 41.0 51 35.248892715358494 37.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 11.0 10 10.0 11 6.0 12 11.0 13 13.0 14 12.0 15 20.0 16 29.0 17 49.0 18 70.0 19 136.0 20 211.0 21 331.0 22 446.0 23 779.0 24 1271.0 25 1819.0 26 2725.0 27 3149.0 28 3445.0 29 3352.0 30 3816.0 31 4524.0 32 5416.0 33 7678.0 34 15364.0 35 23271.0 36 21559.0 37 32499.0 38 58656.0 39 122774.0 40 153.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.58065081870506 19.60332265110569 24.506943447967984 14.309083082221266 2 34.74019865754692 24.491956442021014 23.492929003045234 17.27491589738684 3 32.3575835844454 23.577111334321838 27.104478563798406 16.960826517434352 4 29.434479679852043 25.144688381881668 26.623300011160538 18.797531927105755 5 24.881618596642273 29.826373941742002 24.789783326158705 20.502224135457023 6 26.543900766888285 34.057811578259276 24.856108799285725 14.542178855566714 7 77.56508984231758 6.9501442897912975 10.650659268825434 4.834106599065704 8 77.60335453835239 6.317182442881969 10.745045519044657 5.3344174997209866 9 70.51800832257139 8.76771735144529 13.21248066835669 7.5017936576266315 10 38.38586757226447 25.63256325632563 20.24935826916025 15.732210902249646 11 30.16597311905104 24.234307488719885 25.433586836944567 20.166132555284513 12 26.477256421294303 21.691937309672994 31.03234961177277 20.79845665725993 13 24.48430350281405 23.238149901946716 32.09100620206948 20.186540393169754 14 21.362223178839624 26.269351572838445 30.114315779404027 22.254109468917907 15 20.25828669823504 24.511088790038425 33.59448988377098 21.63613462795555 16 22.56501012420083 23.609636325951435 31.622263675642927 22.203089874204814 17 22.968702667368184 23.556065751502686 28.517721337351126 24.957510243778 18 23.491015768243493 23.704341448637617 29.90513544108034 22.899507342038554 19 25.01682052263197 24.487492227483617 27.936735702555765 22.558951547328647 20 25.467706190908945 24.78595685655522 28.16759936863252 21.57873758390332 21 25.011399690693707 25.207825130339124 28.099679533170708 21.681095645796464 22 23.491653513177404 23.964541381674398 27.59299118317629 24.950813921971907 23 23.66480126273497 24.52065496404713 28.53876692017028 23.27577685304762 24 22.891854402831587 25.096219766904227 28.8149104765549 23.197015353709283 25 22.791409575740182 25.712600245531796 27.915690119736613 23.58030005899141 26 22.65333779754787 25.524146617560305 27.835334258063487 23.987181326828335 27 23.742606144672436 25.42497728033673 28.408666953651885 22.423749621338946 28 21.75411744072958 26.17974840962357 29.25399786355447 22.812136286092375 29 23.31978125348767 25.345259163597518 27.82066612458347 23.51429345833134 30 23.16034502000925 26.14913665279571 28.150699127883804 22.539819199311236 31 24.16830088805982 26.547727236491763 25.868528881873694 23.41544299357472 32 24.246743514931204 27.81396980277738 25.404569442451493 22.534717239839928 33 23.08540999027439 27.15900575564803 26.187401348830537 23.568182905247046 34 22.646960348208733 25.759474498174455 27.14848296423845 24.445082189378358 35 24.635130179684637 25.763619840244896 25.830901930772786 23.77034804929768 36 24.2489756221999 27.00530922657483 25.75628577350489 22.98942937772038 37 22.889941168029846 27.335979974809078 27.289743467100337 22.484335390060746 38 22.87431641714896 27.50912772436664 26.650723043318823 22.965832815165573 39 23.20562491031712 24.91446246073883 27.653258079431133 24.226654549512922 40 23.53852776582006 24.12270212528499 29.23741649527272 23.101353613622233 41 22.37623762376238 25.506927504344638 26.985858006090464 25.130976865802523 42 22.352959933674526 25.749270579231837 27.28623586996381 24.61153361712983 43 23.17437540855535 24.041070773744043 28.562044610258123 24.22250920744248 44 22.01176639403071 25.549656414916853 28.068430031408937 24.3701471596435 45 23.397586135425136 24.719950255895153 27.027949171728764 24.854514436950943 46 23.803510785861196 25.019690374834585 27.66760734044419 23.50919149886003 47 22.42438736627286 25.008529838491096 28.890164378756715 23.676918416479328 48 22.260168045790085 24.46421453739577 28.852218555188852 24.42339886162529 49 22.336059692925815 24.592720141579374 29.394301749015483 23.676918416479328 50 21.565982685225045 24.090177133655395 29.602844342405255 24.740995838714305 51 21.907495097335822 24.226335677045967 27.50912772436664 26.357041501251576 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 210.0 1 524.0 2 838.0 3 2158.5 4 3479.0 5 2389.0 6 1299.0 7 1275.0 8 1251.0 9 1176.5 10 1102.0 11 1131.0 12 1160.0 13 1201.0 14 1242.0 15 1163.0 16 1084.0 17 1019.0 18 954.0 19 910.5 20 867.0 21 989.5 22 1112.0 23 1288.5 24 1465.0 25 1709.5 26 2410.0 27 2866.0 28 3401.0 29 3936.0 30 4567.0 31 5198.0 32 5692.0 33 6186.0 34 6431.5 35 6677.0 36 6955.0 37 7233.0 38 8396.5 39 9560.0 40 10443.0 41 11326.0 42 12897.5 43 14469.0 44 16321.5 45 18174.0 46 20931.5 47 23689.0 48 26147.5 49 28606.0 50 27553.5 51 26501.0 52 23868.5 53 21236.0 54 19333.5 55 17431.0 56 16557.5 57 15684.0 58 15127.5 59 14571.0 60 14426.5 61 14282.0 62 13124.0 63 11966.0 64 11289.5 65 10613.0 66 9081.0 67 7549.0 68 6338.5 69 5128.0 70 4700.5 71 4273.0 72 3718.0 73 3163.0 74 2735.0 75 1794.5 76 1282.0 77 1066.5 78 851.0 79 617.0 80 383.0 81 311.0 82 239.0 83 179.5 84 120.0 85 95.0 86 70.0 87 39.5 88 9.0 89 7.5 90 6.0 91 5.0 92 4.0 93 2.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 313605.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.86428550154854 #Duplication Level Percentage of deduplicated Percentage of total 1 69.3273980088857 22.783954012435075 2 8.589168203309395 5.645537521087653 3 3.602985432686115 3.552286257531506 4 2.317737556089904 3.04683155044 5 1.825962002731028 3.0004468286365933 6 1.592197947391527 3.1395868750832827 7 1.462342349982185 3.364118554357396 8 1.3314904163346293 3.500678494799759 9 1.287540216717555 3.8082680349238265 >10 8.551304705381604 42.677484790746185 >50 0.06592525528897293 1.5057775560475992 >100 0.04295130268827024 2.818203688395169 >500 0.001997735008756756 0.45334179308954325 >1k 9.98867504378378E-4 0.7034840424264237 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2143 0.6833436966885095 No Hit CCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTCTGC 721 0.22990704867588205 Illumina Single End Adapter 1 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTCTGC 660 0.21045582819151482 Illumina Single End Adapter 1 (95% over 21bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCC 499 0.15911736101146345 No Hit CTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTCTGCT 487 0.15529089140798139 Illumina Single End Adapter 1 (95% over 22bp) AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 427 0.13615854339057093 No Hit GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 386 0.12308477224534048 No Hit TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC 355 0.1131997257696784 No Hit AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 334 0.10650340396358476 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 6.377449339136812E-4 0.0 0.0 0.16007397841233398 0.0 2 6.377449339136812E-4 0.0 0.0 0.744248337877266 0.0 3 6.377449339136812E-4 0.0 0.0 1.0685416367723728 0.0 4 6.377449339136812E-4 0.0 0.0 1.46043589866233 0.0 5 6.377449339136812E-4 0.0 0.0 2.621450550852187 0.0 6 6.377449339136812E-4 0.0 0.0 3.3185057636198403 0.0 7 6.377449339136812E-4 0.0 0.0 4.009183527048357 0.0 8 6.377449339136812E-4 0.0 0.0 5.060506050605061 0.0 9 6.377449339136812E-4 0.0 0.0 5.515855933419429 0.0 10 6.377449339136812E-4 0.0 0.0 6.399451539356834 0.0 11 6.377449339136812E-4 0.0 0.0 7.6261539197398 0.0 12 6.377449339136812E-4 0.0 0.0 8.601903668627733 0.0 13 6.377449339136812E-4 0.0 0.0 8.98869597104638 0.0 14 6.377449339136812E-4 0.0 0.0 9.150683184260455 0.0 15 6.377449339136812E-4 0.0 0.0 9.461902712010332 0.0 16 6.377449339136812E-4 0.0 0.0 10.108576074998805 0.0 17 6.377449339136812E-4 0.0 0.0 10.76290237719424 0.0 18 6.377449339136812E-4 0.0 0.0 11.502367628067155 0.0 19 6.377449339136812E-4 0.0 0.0 11.906697916168428 0.0 20 6.377449339136812E-4 0.0 0.0 12.322507613080148 0.0 21 6.377449339136812E-4 0.0 0.0 12.804005038184977 0.0 22 6.377449339136812E-4 0.0 0.0 13.284864718355893 0.0 23 6.377449339136812E-4 0.0 0.0 13.773377337733773 0.0 24 6.377449339136812E-4 0.0 0.0 14.16527159962373 0.0 25 6.377449339136812E-4 0.0 0.0 14.513799206007556 0.0 26 6.377449339136812E-4 0.0 0.0 14.87093636899922 0.0 27 6.377449339136812E-4 0.0 0.0 15.201925989700419 0.0 28 6.377449339136812E-4 0.0 0.0 15.541525167009455 0.0 29 6.377449339136812E-4 0.0 0.0 15.878892237049792 0.0 30 6.377449339136812E-4 0.0 0.0 16.274931841010186 0.0 31 6.377449339136812E-4 0.0 0.0 16.645461647614038 0.0 32 6.377449339136812E-4 0.0 0.0 17.00961400487875 0.0 33 6.377449339136812E-4 0.0 0.0 17.37280974474259 0.0 34 6.377449339136812E-4 0.0 0.0 17.696146426236826 0.0 35 6.377449339136812E-4 0.0 0.0 18.069864957510244 0.0 36 6.377449339136812E-4 0.0 0.0 18.397346981074918 0.0 37 6.377449339136812E-4 0.0 0.0 18.735032923582214 0.0 38 6.377449339136812E-4 0.0 0.0 19.078777442961687 0.0 39 6.377449339136812E-4 0.0 0.0 19.419333237671594 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACGAAT 55 1.8189894E-12 45.000004 12 GCTACGA 55 1.8189894E-12 45.000004 10 TCGTTTA 20 7.025434E-4 45.0 38 CCGGGTT 20 7.025434E-4 45.0 5 AGATACG 40 6.7884685E-9 45.0 1 ATAGCGG 20 7.025434E-4 45.0 2 TACGGGA 80 0.0 45.0 4 TCTAGCG 20 7.025434E-4 45.0 1 TATTAGT 20 7.025434E-4 45.0 30 AACGATG 20 7.025434E-4 45.0 1 TAGGGTC 40 6.7884685E-9 45.0 5 TGTTACG 20 7.025434E-4 45.0 1 CATCGTT 20 7.025434E-4 45.0 36 CGTAAAC 20 7.025434E-4 45.0 38 GCGTAAG 20 7.025434E-4 45.0 1 GCATCGC 20 7.025434E-4 45.0 22 CTCGTAC 30 2.1604355E-6 44.999996 29 CCGATAA 30 2.1604355E-6 44.999996 11 TAGCATA 60 0.0 44.999996 30 TCGTACG 30 2.1604355E-6 44.999996 30 >>END_MODULE