SRR3551567_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551567_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	367345
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2360	0.6424478351413522	No Hit
GCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTCTGC	890	0.24227905647279807	No Hit
CCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTCTGC	718	0.19545658713198766	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCC	586	0.15952306414950523	No Hit
CTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTCTGCT	537	0.14618410486055342	No Hit
TCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTCTGC	441	0.12005063360056621	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	431	0.11732839701098423	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	399	0.10861723992432182	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	381	0.10371721406307421	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCCGAT	20	7.027011E-4	45.000004	37
GCGGTAT	20	7.027011E-4	45.000004	6
CGTTATC	20	7.027011E-4	45.000004	45
ACGGCTA	20	7.027011E-4	45.000004	34
CGGCTAT	20	7.027011E-4	45.000004	35
ACGTAGG	40	6.7939254E-9	45.000004	2
CGGTATG	20	7.027011E-4	45.000004	7
CGAAAGG	55	1.8189894E-12	45.0	2
ACGGGTC	25	3.885606E-5	45.0	5
AGTAGCG	25	3.885606E-5	45.0	1
TACGTAG	25	3.885606E-5	45.0	1
ACGGTCT	35	1.2089185E-7	45.0	30
CGATTGT	30	2.1614542E-6	44.999996	10
CACGACG	30	2.1614542E-6	44.999996	26
TAGGGCG	145	0.0	43.448273	5
GCGATCA	65	0.0	41.53846	9
AGCGACT	55	6.002665E-11	40.909092	19
TAGGGTC	50	1.0768417E-9	40.5	5
CGTTTTT	1120	0.0	40.379463	1
CGTGCGG	45	1.9221261E-8	40.000004	2