SRR3551564_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551564_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	555318
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3529	0.6354917362664275	No Hit
GCTGTCTCTTATACACATCTGACGCCCACCATTTCGTATGCCGTCTTCTGC	2160	0.3889663219992869	RNA PCR Primer, Index 14 (95% over 23bp)
GAATCTGTCTCTTATACACATCTGACGCCCACCATTTCGTATGCCGTCTTC	1505	0.27101588639302165	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCACCATTTCGTATGCCG	1431	0.2576901883245276	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCACCATTTCGTATGC	1382	0.2488664152791734	No Hit
CTGTCTCTTATACACATCTGACGCCCACCATTTCGTATGCCGTCTTCTGCT	1295	0.23319971619864657	Illumina PCR Primer Index 11 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCCCACCATTTCGTATGCCGTCTTCTGC	1233	0.22203494214125963	Illumina PCR Primer Index 11 (95% over 22bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCCACCATTTCGTATGCC	913	0.16441030184506897	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	826	0.1487436027645421	No Hit
TCTGTCTCTTATACACATCTGACGCCCACCATTTCGTATGCCGTCTTCTGC	735	0.1323565956803129	RNA PCR Primer, Index 14 (95% over 23bp)
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	733	0.1319964416784617	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATGG	65	0.0	45.000004	2
ATTCGCT	25	3.8881917E-5	45.000004	13
ATATGCG	25	3.8881917E-5	45.000004	1
TACGCGG	35	1.2104101E-7	45.0	2
GTAGACG	20	7.030133E-4	45.0	1
TTAACGG	20	7.030133E-4	45.0	2
CGGTCTA	35	1.2104101E-7	45.0	31
CAGTACG	20	7.030133E-4	45.0	1
GGTTCGA	20	7.030133E-4	45.0	38
CCACGAA	20	7.030133E-4	45.0	18
CGATATA	20	7.030133E-4	45.0	12
AGTCGTG	20	7.030133E-4	45.0	1
ATCGCAT	30	2.1634678E-6	44.999996	10
CGAATAT	95	0.0	42.63158	14
CGAAAGG	55	6.002665E-11	40.909092	2
CGTTTTT	1605	0.0	39.95327	1
CTCACGA	40	3.4539153E-7	39.375	24
CGTTCAT	40	3.4539153E-7	39.375	17
CTGACTA	110	0.0	38.863636	22
CCAAACT	145	0.0	38.793102	18