SRR3551561_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551561_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	302958
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1974	0.6515754659061652	No Hit
GCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCTGC	1374	0.4535282118313429	No Hit
CCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCTGC	1274	0.4205203361522059	No Hit
CTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCTGCT	956	0.3155552914925501	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCC	732	0.24161764997128313	No Hit
TCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCTGC	527	0.1739515048290522	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	426	0.14061355039312382	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	381	0.12576000633751214	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCG	373	0.12311937628318116	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTC	362	0.1194885099584761	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGC	355	0.1171779586609365	No Hit
ACTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCTGC	352	0.11618772239056238	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	312	0.10298457211890756	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	20	7.0250535E-4	45.0	25
TTTAGCG	20	7.0250535E-4	45.0	1
TTAGGCG	20	7.0250535E-4	45.0	1
TTTACGG	25	3.8839826E-5	45.0	2
TTAGCTA	20	7.0250535E-4	45.0	1
TCGATTG	20	7.0250535E-4	45.0	1
TCGTCGG	20	7.0250535E-4	45.0	2
AATTCGT	20	7.0250535E-4	45.0	31
ACCGTCG	20	7.0250535E-4	45.0	15
CAATCTA	20	7.0250535E-4	45.0	44
AATACGG	20	7.0250535E-4	45.0	2
ACGGTCT	20	7.0250535E-4	45.0	30
CCCTCGT	30	2.1601918E-6	44.999996	14
AGTACGG	30	2.1601918E-6	44.999996	2
TACGGGA	90	0.0	42.500004	4
AACGGGA	70	0.0	41.785717	4
TACGAAT	70	0.0	41.785717	12
CGAATAT	65	0.0	41.53846	14
CGGGATA	60	3.6379788E-12	41.249996	6
CGTTTTT	845	0.0	40.739647	1