SRR3551560_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551560_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	589345
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6002	1.0184187530224231	No Hit
GCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTGC	1120	0.1900414867352739	TruSeq Adapter, Index 16 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTGCT	685	0.11623073072648449	TruSeq Adapter, Index 13 (95% over 22bp)
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	663	0.11249777295132732	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	598	0.1014685795247266	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTCGTC	20	7.030486E-4	45.0	11
AAACGCG	25	3.8884842E-5	45.0	1
AACGCGT	20	7.030486E-4	45.0	25
CGATCAA	25	3.8884842E-5	45.0	10
ATACCGG	20	7.030486E-4	45.0	2
CGTTTTT	2265	0.0	40.62914	1
ATTAGCG	50	1.0804797E-9	40.5	1
TACGAAT	50	1.0804797E-9	40.5	12
ACGCGCA	45	1.9255822E-8	40.000004	17
GCGTTTA	40	3.4544064E-7	39.375	32
CGTTTAC	40	3.4544064E-7	39.375	33
TCGTTTA	35	6.243108E-6	38.571426	38
GTAAGCG	35	6.243108E-6	38.571426	1
CACAACG	70	0.0	38.571426	12
CCAGTCG	35	6.243108E-6	38.571426	28
CGTAAGG	90	0.0	37.500004	2
CTATGCG	30	1.139247E-4	37.499996	1
TATTGCG	30	1.139247E-4	37.499996	1
CAAGCCG	30	1.139247E-4	37.499996	1
TTACGAG	30	1.139247E-4	37.499996	1