SRR3551559_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551559_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	339098
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3161	0.9321788981356423	No Hit
GCTGTCTCTTATACACATCTGACGCTCGTGGTATCGTATGCCGTCTTCTGC	1282	0.3780617992438764	TruSeq Adapter, Index 21 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCTCGTGGTATCGTATGCCGTCTTCTGC	1238	0.3650861992698276	TruSeq Adapter, Index 21 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCTCGTGGTATCGTATGCCGTCTTCTGCT	862	0.2542037994915924	TruSeq Adapter, Index 15 (95% over 22bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCGTGGTATCGTATGCC	522	0.1539377996921244	No Hit
TCTGTCTCTTATACACATCTGACGCTCGTGGTATCGTATGCCGTCTTCTGC	510	0.150398999699202	TruSeq Adapter, Index 21 (95% over 22bp)
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	398	0.1173701997652596	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCGTGGTATCGTATGCCG	362	0.10675379978649241	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	347	0.1023302997953394	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGGTAC	30	2.1609576E-6	45.000004	17
ACGGGCG	30	2.1609576E-6	45.000004	5
GGCGGTA	30	2.1609576E-6	45.000004	16
CGGTACT	30	2.1609576E-6	45.000004	18
TTAGGCG	45	3.8380676E-10	45.0	1
CTCCATA	20	7.026245E-4	45.0	35
ATTCGAC	20	7.026245E-4	45.0	42
GATCAAC	25	3.8849692E-5	45.0	9
CGATTCG	20	7.026245E-4	45.0	10
ATATGCG	25	3.8849692E-5	45.0	1
TCGATAA	45	3.8380676E-10	45.0	1
CGTTCAT	50	2.1827873E-11	45.0	17
CCATATG	20	7.026245E-4	45.0	28
TTGCGAG	35	1.2085366E-7	45.0	1
GTATAAG	20	7.026245E-4	45.0	1
CAATGCG	20	7.026245E-4	45.0	1
GAATTGA	20	7.026245E-4	45.0	10
CGCAATA	20	7.026245E-4	45.0	28
ATTGCGA	20	7.026245E-4	45.0	22
GATTCGA	20	7.026245E-4	45.0	41