SRR3551558_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551558_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	413373
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2028	0.49059807970041586	No Hit
GCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTGC	1239	0.2997293001719996	No Hit
CTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTGCT	791	0.19135260406460994	Illumina Single End Adapter 2 (95% over 21bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	708	0.17127388581257122	No Hit
CCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTGC	687	0.16619372818253733	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCC	542	0.13111644930849378	No Hit
TCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTGC	504	0.1219237831208134	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	445	0.10765095930309913	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCCTCGT	35	1.2094097E-7	45.000004	14
CGAACGG	25	3.8864564E-5	45.0	2
ACGTTAG	20	7.028039E-4	45.0	1
ATAGCCC	25	3.8864564E-5	45.0	13
ACGGGTA	20	7.028039E-4	45.0	5
TACGCGG	20	7.028039E-4	45.0	2
CACTATC	20	7.028039E-4	45.0	36
GACGGTC	20	7.028039E-4	45.0	29
ACTAAGG	20	7.028039E-4	45.0	2
ATGGTCC	25	3.8864564E-5	45.0	11
TGTAGCG	40	6.7975634E-9	45.0	1
TTACGAC	20	7.028039E-4	45.0	30
CGGTCTA	20	7.028039E-4	45.0	31
ATACGAG	25	3.8864564E-5	45.0	1
GTACGAG	25	3.8864564E-5	45.0	1
CCATAGT	30	2.1621163E-6	44.999996	18
CGAATAT	80	0.0	42.1875	14
CGTTAGG	55	6.002665E-11	40.909092	2
TAAGCAG	55	6.002665E-11	40.909092	1
TTACACG	50	1.0786607E-9	40.5	34