SRR3551555_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551555_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	401867
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCG	4598	1.1441596349040852	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTC	4555	1.133459577422381	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGC	4329	1.0772220660069127	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3569	0.8881047709814441	No Hit
GCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCTGC	1681	0.41829759597080624	TruSeq Adapter, Index 14 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGTAAGACT	1156	0.2876573592755812	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTT	1077	0.26799911413477595	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCT	990	0.24635016062528153	No Hit
GAACTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCT	939	0.2336593947748882	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGTAAGACTCGTA	755	0.1878731022950379	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTC	645	0.16050086222556217	No Hit
CTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCTGCT	636	0.1582613153107869	TruSeq Adapter, Index 15 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCTGC	520	0.12939604396479432	TruSeq Adapter, Index 14 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCC	464	0.11546108538397033	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	423	0.10525870499443846	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	419	0.10426335081009387	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAGCGGA	35	1.2092823E-7	45.000004	37
CAACGGC	20	7.027804E-4	45.000004	33
GACAATC	20	7.027804E-4	45.000004	9
TTACTAG	20	7.027804E-4	45.000004	1
CGATGCA	20	7.027804E-4	45.000004	10
GCCCGGT	20	7.027804E-4	45.000004	31
TTTAGCG	25	3.886263E-5	45.0	1
CTATCGG	25	3.886263E-5	45.0	1
CGAATGC	70	0.0	41.785717	45
CTCGAAT	65	0.0	41.53846	43
CGAGGGA	245	0.0	41.32653	4
CGTTCAT	55	6.002665E-11	40.909092	17
CCGATGA	635	0.0	40.3937	18
TCGATCA	95	0.0	40.263157	17
GCCTCGA	95	0.0	40.263157	14
CTCGATC	95	0.0	40.263157	16
CGTTTTT	1540	0.0	40.17857	1
GCGTTCA	90	0.0	40.000004	37
CGATGAA	680	0.0	39.705883	19
GATGAAT	720	0.0	39.375004	20