##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551555_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 401867 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.27115687528461 33.0 31.0 34.0 30.0 34.0 2 32.388193108665305 34.0 31.0 34.0 30.0 34.0 3 32.39963968178527 34.0 31.0 34.0 30.0 34.0 4 35.92185723137257 37.0 35.0 37.0 35.0 37.0 5 35.98083196679499 37.0 35.0 37.0 35.0 37.0 6 35.99861148091284 37.0 35.0 37.0 35.0 37.0 7 36.10866779307582 37.0 36.0 37.0 35.0 37.0 8 35.95862810332772 37.0 35.0 37.0 35.0 37.0 9 37.80048871890451 39.0 38.0 39.0 35.0 39.0 10 37.58331487780783 39.0 37.0 39.0 35.0 39.0 11 37.5474074756076 39.0 37.0 39.0 35.0 39.0 12 37.50522187688962 39.0 37.0 39.0 35.0 39.0 13 37.4533489935725 39.0 37.0 39.0 35.0 39.0 14 38.81188552431526 40.0 38.0 41.0 35.0 41.0 15 38.79367800789814 40.0 38.0 41.0 35.0 41.0 16 38.88572587448086 40.0 38.0 41.0 35.0 41.0 17 38.757900001741866 40.0 38.0 41.0 35.0 41.0 18 38.70016945904988 40.0 38.0 41.0 35.0 41.0 19 38.618134855561664 40.0 38.0 41.0 35.0 41.0 20 38.39243829426153 40.0 37.0 41.0 34.0 41.0 21 38.37623392814041 40.0 37.0 41.0 34.0 41.0 22 38.363154974158114 40.0 37.0 41.0 34.0 41.0 23 38.2480970072188 40.0 37.0 41.0 34.0 41.0 24 38.27358553949441 40.0 37.0 41.0 34.0 41.0 25 38.21075878337858 40.0 37.0 41.0 34.0 41.0 26 38.161314564271265 40.0 37.0 41.0 34.0 41.0 27 38.09163977136714 40.0 37.0 41.0 34.0 41.0 28 37.99152455912031 40.0 37.0 41.0 34.0 41.0 29 37.92694349125457 40.0 37.0 41.0 34.0 41.0 30 37.79817700881137 40.0 36.0 41.0 33.0 41.0 31 37.743586808570996 40.0 36.0 41.0 33.0 41.0 32 37.52045577268101 40.0 36.0 41.0 33.0 41.0 33 37.36515314768319 40.0 36.0 41.0 33.0 41.0 34 37.16394478770339 40.0 36.0 41.0 32.0 41.0 35 37.074686401222294 40.0 36.0 41.0 31.0 41.0 36 36.96236565828993 40.0 35.0 41.0 31.0 41.0 37 36.86921046017712 40.0 35.0 41.0 31.0 41.0 38 36.7060943048322 40.0 35.0 41.0 30.0 41.0 39 36.71251682770668 40.0 35.0 41.0 31.0 41.0 40 36.63982113485307 40.0 35.0 41.0 30.0 41.0 41 36.57271684413002 40.0 35.0 41.0 30.0 41.0 42 36.45620317169611 40.0 35.0 41.0 30.0 41.0 43 36.466758902821084 39.0 35.0 41.0 30.0 41.0 44 36.50063080571433 39.0 35.0 41.0 30.0 41.0 45 36.38955176712693 39.0 35.0 41.0 30.0 41.0 46 36.3346156813075 39.0 35.0 41.0 30.0 41.0 47 36.22170519102091 39.0 35.0 41.0 30.0 41.0 48 36.15230909728841 39.0 35.0 41.0 30.0 41.0 49 36.111554320210416 39.0 35.0 41.0 29.0 41.0 50 36.02052918005211 39.0 35.0 41.0 29.0 41.0 51 35.27825375061899 38.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 4.0 9 6.0 10 10.0 11 7.0 12 7.0 13 16.0 14 10.0 15 20.0 16 29.0 17 53.0 18 111.0 19 264.0 20 579.0 21 1057.0 22 1547.0 23 2010.0 24 2478.0 25 3160.0 26 4026.0 27 4537.0 28 4637.0 29 4697.0 30 5167.0 31 6195.0 32 7607.0 33 10092.0 34 17848.0 35 26161.0 36 25648.0 37 37609.0 38 71413.0 39 164619.0 40 243.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.146030900770654 18.59520687192529 22.96705128811273 13.291710939191326 2 30.804221297095808 29.84071844665026 23.566254507088168 15.788805749165768 3 29.419683626672505 28.905583190458533 26.650857124371996 15.023876058496965 4 25.988448914690682 23.297011200222958 32.9735957418748 17.74094414321156 5 28.723433374723477 27.185611159911115 24.5640970768936 19.52685838847181 6 24.842298571417906 37.31632604817017 23.97111482157032 13.870260558841608 7 74.2703431732389 5.51276914999241 15.896801678167154 4.320085998601527 8 74.4679209788313 10.417874570442459 10.513677410685625 4.60052704004061 9 67.44246230718123 8.43786625923502 12.17591889854106 11.94375253504269 10 36.47425640821466 30.367509648714623 18.911480664000777 14.24675327906994 11 29.097188870944862 23.347774263624533 28.268307673931925 19.28672919149868 12 24.19556719014002 20.90666812651947 31.740351907471876 23.157412775868632 13 24.68851634993667 22.494755727641234 34.51465285778628 18.30207506463581 14 20.242766885561643 28.579107017993515 29.664043078929097 21.514083017515745 15 18.9254156225816 24.116685371030712 34.968285527301326 21.989613479086366 16 21.024368758818216 24.525029425158074 29.483137455924474 24.967464360099235 17 20.756120806137353 25.74359178534192 30.31749310095131 23.18279430756942 18 21.553648346343444 23.288799528202116 30.596441111113876 24.561111014340565 19 21.558127440172992 25.04286243956334 28.838396783015273 24.560613337248395 20 23.896463257744475 24.422507944170587 31.45368990238064 20.2273388957043 21 22.60225397955045 28.06724612869432 29.63094755229964 19.699552339455593 22 21.09503890590668 22.66670316298676 31.684363234602493 24.553894696504067 23 21.81194275718086 26.095200650961637 30.10772220660069 21.985134385256814 24 21.170934662462955 25.558207068507738 29.618007947903163 23.65285032112614 25 20.568994219480572 30.021126392562714 27.459831237698047 21.950048150258667 26 20.238038953186006 24.938599088753243 30.726085993624757 24.097275964435998 27 24.266983852866744 24.964975974638374 28.227498152373798 22.540542020121084 28 20.070819450216113 26.351753191976453 31.588062717267157 21.98936464054028 29 23.84495367870465 23.40973506159998 29.55156805609816 23.19374320359721 30 23.10913809792792 26.975093749922234 29.384846230220447 20.530921921929394 31 24.06791301599783 25.25586823501308 27.236871900404857 23.439346848584233 32 24.54020857646933 28.87646908056646 26.335329847934762 20.24799249502945 33 22.88418805226605 26.78075084542896 26.141733459079745 24.193327643225246 34 24.590971639870904 25.694819430309035 27.171178524238123 22.543030405581945 35 24.556383081964928 26.908902696663322 26.119089151385904 22.415625069985843 36 23.874067788596726 27.62978796467488 26.90765850393289 21.588485742795502 37 22.472111419947396 28.001801591073665 28.11353009826634 21.4125568907126 38 19.720454777326825 28.509929902181568 27.56160620304728 24.20800911744433 39 23.94797283678431 27.205767082144096 26.504788897819427 22.34147118325217 40 22.188186638863105 27.23214396802922 28.611456028984716 21.968213364122956 41 21.790044965125276 25.656498294211765 26.818574304434055 25.7348824362289 42 21.693495609243854 26.54883332047667 29.37091127163962 22.38675979863985 43 23.088982175694944 24.791286669470246 27.521294358581322 24.598436796253488 44 22.935448792759793 24.529508518987626 28.932706591981926 23.60233609627066 45 21.9172014621753 24.532245742994576 28.23944240258593 25.311110392244203 46 24.181632231559195 26.966882077901396 26.879042071132986 21.97244361940642 47 20.702371680182747 25.736375467505418 31.8782084620036 21.683044390308236 48 21.661893113890915 25.377301445503115 28.861538767801285 24.099266672804685 49 21.238618746998387 24.499647893457286 31.532074044397774 22.729659315146552 50 21.934371321855238 23.5189751833318 30.639987856678953 23.906665638134008 51 22.05953711053657 23.205189776717173 28.334996404283007 26.40027670846325 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 149.0 1 447.0 2 745.0 3 3165.5 4 5586.0 5 3694.5 6 1803.0 7 1732.0 8 1661.0 9 1564.5 10 1468.0 11 1425.5 12 1383.0 13 1362.0 14 1341.0 15 1314.5 16 1288.0 17 1180.5 18 1073.0 19 1082.5 20 1092.0 21 1238.0 22 1384.0 23 1514.5 24 1645.0 25 2141.0 26 3262.0 27 3887.0 28 4554.0 29 5221.0 30 5830.5 31 6440.0 32 7008.5 33 7577.0 34 8923.5 35 10270.0 36 10831.0 37 11392.0 38 12236.0 39 13080.0 40 14989.0 41 16898.0 42 18121.5 43 19345.0 44 21399.0 45 23453.0 46 35332.0 47 47211.0 48 42566.5 49 37922.0 50 36752.0 51 35582.0 52 31412.0 53 27242.0 54 25110.0 55 22978.0 56 21174.0 57 19370.0 58 18195.5 59 17021.0 60 15887.5 61 14754.0 62 13208.5 63 11663.0 64 10590.0 65 9517.0 66 7923.5 67 6330.0 68 5379.5 69 4429.0 70 3626.5 71 2824.0 72 2330.5 73 1837.0 74 1485.0 75 860.0 76 587.0 77 472.5 78 358.0 79 261.5 80 165.0 81 127.0 82 89.0 83 58.5 84 28.0 85 17.0 86 6.0 87 4.5 88 3.0 89 1.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 401867.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.330117622657355 #Duplication Level Percentage of deduplicated Percentage of total 1 72.54588183119736 24.905086563044065 2 7.763320893229977 5.33031438814037 3 3.310750402771176 3.4097535223918403 4 2.2139191341228317 3.040164171259541 5 1.691413896101263 2.903321900087675 6 1.4875183311794271 3.0640007565149228 7 1.348017645884081 3.2394323038432717 8 1.2412374215860966 3.4089461344555705 9 1.1254847147121196 3.477422037471302 >10 7.164931700012228 37.058227418231624 >50 0.06611274768591975 1.573546689390362 >100 0.03196660327670845 2.242222973152537 >500 0.004359082265005697 1.1186173564615272 >1k 0.00508559597583998 5.228943785555388 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCG 4598 1.1441596349040852 No Hit GAATCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTC 4555 1.133459577422381 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGC 4329 1.0772220660069127 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3569 0.8881047709814441 No Hit GCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCTGC 1681 0.41829759597080624 TruSeq Adapter, Index 14 (95% over 21bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGTAAGACT 1156 0.2876573592755812 No Hit GAATGCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTT 1077 0.26799911413477595 No Hit GAATGACTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCT 990 0.24635016062528153 No Hit GAACTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCT 939 0.2336593947748882 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGTAAGACTCGTA 755 0.1878731022950379 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTC 645 0.16050086222556217 No Hit CTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCTGCT 636 0.1582613153107869 TruSeq Adapter, Index 15 (95% over 23bp) CCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCTGC 520 0.12939604396479432 TruSeq Adapter, Index 14 (95% over 21bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCC 464 0.11546108538397033 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG 423 0.10525870499443846 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 419 0.10426335081009387 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.16945904988466334 0.0 2 0.0 0.0 0.0 0.8726767811241033 0.0 3 0.0 0.0 0.0 1.157845754938823 0.0 4 0.0 0.0 0.0 1.7020556552292176 0.0 5 0.0 0.0 0.0 3.6915198311879305 0.0 6 0.0 0.0 0.0 4.571910607240704 0.0 7 0.0 0.0 0.0 5.361724152518121 0.0 8 0.0 0.0 0.0 6.368276071436569 0.0 9 0.0 0.0 0.0 6.745266468757077 0.0 10 0.0 0.0 0.0 8.62822774699092 0.0 11 0.0 0.0 0.0 9.606660910201635 0.0 12 0.0 0.0 0.0 11.53068054853969 0.0 13 0.0 0.0 0.0 11.969134066743475 0.0 14 0.0 0.0 0.0 12.171190966165423 0.0 15 0.0 0.0 0.0 12.629551568056097 0.0 16 0.0 0.0 0.0 13.144398519908329 0.0 17 0.0 0.0 0.0 13.76425533820891 0.0 18 0.0 0.0 0.0 14.406756464203331 0.0 19 0.0 0.0 0.0 15.100518330691498 0.0 20 0.0 0.0 0.0 15.529018307051835 0.0 21 0.0 0.0 0.0 15.958513637596518 0.0 22 2.488385460861429E-4 0.0 0.0 16.423344041685432 0.0 23 2.488385460861429E-4 0.0 0.0 16.871999940278748 0.0 24 2.488385460861429E-4 0.0 0.0 17.24351588958536 0.0 25 2.488385460861429E-4 0.0 0.0 17.576213025702533 0.0 26 2.488385460861429E-4 0.0 0.0 17.945987105186543 0.0 27 2.488385460861429E-4 0.0 0.0 18.31899608576967 0.0 28 2.488385460861429E-4 0.0 0.0 18.65443044589379 0.0 29 2.488385460861429E-4 0.0 0.0 18.99782763949267 0.0 30 2.488385460861429E-4 0.0 0.0 19.393729766315722 0.0 31 2.488385460861429E-4 0.0 0.0 19.72592922534072 0.0 32 2.488385460861429E-4 0.0 0.0 20.069077580393515 0.0 33 2.488385460861429E-4 0.0 0.0 20.41570967509151 0.0 34 4.976770921722858E-4 0.0 0.0 20.753383582130407 0.0 35 4.976770921722858E-4 0.0 0.0 21.09752729136754 0.0 36 4.976770921722858E-4 0.0 0.0 21.43246397439949 0.0 37 4.976770921722858E-4 0.0 0.0 21.761926209417542 0.0 38 4.976770921722858E-4 0.0 0.0 22.082679095322582 0.0 39 4.976770921722858E-4 0.0 0.0 22.437274023495334 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CAGCGGA 35 1.2092823E-7 45.000004 37 CAACGGC 20 7.027804E-4 45.000004 33 GACAATC 20 7.027804E-4 45.000004 9 TTACTAG 20 7.027804E-4 45.000004 1 CGATGCA 20 7.027804E-4 45.000004 10 GCCCGGT 20 7.027804E-4 45.000004 31 TTTAGCG 25 3.886263E-5 45.0 1 CTATCGG 25 3.886263E-5 45.0 1 CGAATGC 70 0.0 41.785717 45 CTCGAAT 65 0.0 41.53846 43 CGAGGGA 245 0.0 41.32653 4 CGTTCAT 55 6.002665E-11 40.909092 17 CCGATGA 635 0.0 40.3937 18 TCGATCA 95 0.0 40.263157 17 GCCTCGA 95 0.0 40.263157 14 CTCGATC 95 0.0 40.263157 16 CGTTTTT 1540 0.0 40.17857 1 GCGTTCA 90 0.0 40.000004 37 CGATGAA 680 0.0 39.705883 19 GATGAAT 720 0.0 39.375004 20 >>END_MODULE