SRR3551554_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551554_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	492114
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5679	1.154000902229971	No Hit
GCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTCTGC	970	0.19710879999349745	TruSeq Adapter, Index 20 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTCTGCT	599	0.12171976411969586	TruSeq Adapter, Index 23 (95% over 22bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCC	596	0.12111014927435512	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	568	0.11542041071784181	No Hit
CCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTCTGC	501	0.10180567917189919	TruSeq Adapter, Index 20 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATGG	40	6.8012014E-9	45.0	2
TAACGAT	20	7.0293504E-4	45.0	13
GTATGCG	20	7.0293504E-4	45.0	1
CGAATAT	85	0.0	45.0	14
TTAACGA	20	7.0293504E-4	45.0	12
CTCGCAA	20	7.0293504E-4	45.0	14
TCGAGTG	20	7.0293504E-4	45.0	1
GCTACGA	85	0.0	45.0	10
CGTTTTT	2325	0.0	41.612904	1
ATAGCGG	60	3.6379788E-12	41.249996	2
GCGCGAC	55	6.002665E-11	40.909092	9
AGCTACG	95	0.0	40.263157	9
TATTGCG	45	1.9244908E-8	40.0	1
CGGGTAC	40	3.452842E-7	39.375	6
TACGAAT	100	0.0	38.25	12
AGACCTA	95	0.0	37.894737	32
CGCGCAA	30	1.1389734E-4	37.499996	18
TGTTGCG	30	1.1389734E-4	37.499996	1
CATACGA	60	1.546141E-10	37.499996	18
TATACGG	30	1.1389734E-4	37.499996	2