SRR3551553_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551553_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	400905
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4940	1.232212120078323	No Hit
GCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGC	751	0.18732617453012557	No Hit
CTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGCT	620	0.15465010413938465	No Hit
CCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGC	605	0.15090856936181887	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	525	0.1309537172148015	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCC	501	0.12496726157069629	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	406	0.10127087464611316	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAACGCC	30	2.1619526E-6	45.000004	12
TGATGCG	30	2.1619526E-6	45.000004	1
GTAACGG	60	0.0	45.000004	2
TCGTTTA	25	3.8862454E-5	45.0	38
CGCATCG	25	3.8862454E-5	45.0	21
TGCATAG	35	1.2092823E-7	45.0	1
CCGTACT	20	7.027785E-4	45.0	29
TGCGACG	20	7.027785E-4	45.0	1
CAATGCG	25	3.8862454E-5	45.0	1
CGGTAAT	25	3.8862454E-5	45.0	6
TATCGAG	20	7.027785E-4	45.0	1
GTGATAG	55	6.002665E-11	40.909092	1
CGTTTTT	1965	0.0	40.76336	1
ACTGCGG	40	3.4507138E-7	39.375	2
GCGTAAG	40	3.4507138E-7	39.375	1
AATGCGG	75	0.0	39.000004	2
TCGGGAT	70	0.0	38.571426	5
CTACGAA	35	6.238117E-6	38.571426	11
TATTAGT	35	6.238117E-6	38.571426	30
CGTAAGG	70	0.0	38.571426	2