SRR3551550_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551550_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	630867
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCG	7276	1.153333428440543	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTC	7206	1.1422375873203068	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGC	6797	1.0774061727749271	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4777	0.7572119004481135	No Hit
GCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTCTGC	3135	0.49693517017057476	Illumina PCR Primer Index 11 (95% over 23bp)
GAATGACTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCT	1606	0.25457029770141726	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTAACACCT	1307	0.2071752049164087	No Hit
CCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTCTGC	1300	0.2060656208043851	Illumina PCR Primer Index 11 (95% over 23bp)
GAACTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTCT	1298	0.20574859677237833	Illumina PCR Primer Index 11 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTCTGCT	1259	0.19956662814824677	Illumina PCR Primer Index 11 (95% over 24bp)
GAATGATCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTC	1123	0.17800899397178802	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTAACACCTCGTA	1084	0.17182702534765648	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCC	758	0.12015210813055682	No Hit
TCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTCTGC	712	0.11286055539440167	Illumina PCR Primer Index 11 (95% over 23bp)
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	660	0.10461793056222626	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	50	2.1827873E-11	45.0	25
CGTATTT	20	7.030864E-4	45.0	32
GTTAGCG	40	6.8066583E-9	45.0	1
ACGATAT	20	7.030864E-4	45.0	23
TACGCCG	25	3.8887985E-5	45.0	29
GCGTATG	35	1.2107557E-7	45.0	1
CGTTTTT	1905	0.0	41.220474	1
CGACGGT	55	6.002665E-11	40.909092	28
CGGTCTA	55	6.002665E-11	40.909092	31
CGAATAT	50	1.0804797E-9	40.5	14
TACGGCT	795	0.0	40.18868	7
CGTATGG	45	1.925946E-8	40.0	2
ATAACGG	45	1.925946E-8	40.0	2
CGATGAA	630	0.0	39.642857	19
GCGCCCA	40	3.4549157E-7	39.375	33
GGCGTAG	35	6.2438085E-6	38.571426	1
GCAAACG	35	6.2438085E-6	38.571426	1
CCGATGA	640	0.0	38.320312	18
CGGGTCA	30	1.1393383E-4	37.499996	6
ACTTGCG	55	2.744855E-9	36.81818	14