##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551550_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 630867 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.223826892197565 33.0 31.0 34.0 30.0 34.0 2 32.34547218351887 34.0 31.0 34.0 30.0 34.0 3 32.364306581260394 34.0 31.0 34.0 30.0 34.0 4 35.91639442227918 37.0 35.0 37.0 35.0 37.0 5 35.98698457836596 37.0 35.0 37.0 35.0 37.0 6 35.988373143626156 37.0 35.0 37.0 35.0 37.0 7 36.12513097055322 37.0 36.0 37.0 35.0 37.0 8 35.955933659551064 37.0 35.0 37.0 35.0 37.0 9 37.82495359560731 39.0 38.0 39.0 35.0 39.0 10 37.562254801725246 39.0 37.0 39.0 35.0 39.0 11 37.523100748652254 39.0 37.0 39.0 35.0 39.0 12 37.453678826123415 39.0 37.0 39.0 35.0 39.0 13 37.38386220867473 39.0 37.0 39.0 35.0 39.0 14 38.674641406191796 40.0 38.0 41.0 35.0 41.0 15 38.6690887302712 40.0 38.0 41.0 35.0 41.0 16 38.757566967363964 40.0 38.0 41.0 35.0 41.0 17 38.64696362307745 40.0 38.0 41.0 35.0 41.0 18 38.59065698475273 40.0 38.0 41.0 35.0 41.0 19 38.51650664878651 40.0 37.0 41.0 34.0 41.0 20 38.341579128405826 40.0 37.0 41.0 34.0 41.0 21 38.30629593876364 40.0 37.0 41.0 34.0 41.0 22 38.29629541567399 40.0 37.0 41.0 34.0 41.0 23 38.21570632161771 40.0 37.0 41.0 34.0 41.0 24 38.147902806772265 40.0 37.0 41.0 34.0 41.0 25 38.09872286868706 40.0 36.0 41.0 34.0 41.0 26 38.08418256145907 40.0 37.0 41.0 34.0 41.0 27 38.05310628072161 40.0 36.0 41.0 34.0 41.0 28 37.98502695496832 40.0 36.0 41.0 34.0 41.0 29 37.93464866604213 40.0 36.0 41.0 34.0 41.0 30 37.79983895179174 40.0 36.0 41.0 33.0 41.0 31 37.75057341721789 40.0 36.0 41.0 33.0 41.0 32 37.55661969955632 40.0 36.0 41.0 33.0 41.0 33 37.44825137469546 40.0 36.0 41.0 33.0 41.0 34 37.27511821033593 40.0 36.0 41.0 33.0 41.0 35 37.198531544683746 40.0 35.0 41.0 33.0 41.0 36 37.16030478690437 40.0 35.0 41.0 32.0 41.0 37 37.06975796800276 40.0 35.0 41.0 32.0 41.0 38 36.939243929386066 40.0 35.0 41.0 31.0 41.0 39 36.914674566905546 40.0 35.0 41.0 32.0 41.0 40 36.88642297029326 39.0 35.0 41.0 31.0 41.0 41 36.74213899284635 39.0 35.0 41.0 31.0 41.0 42 36.69121859282543 39.0 35.0 41.0 31.0 41.0 43 36.6619017954656 39.0 35.0 41.0 31.0 41.0 44 36.673243330210646 39.0 35.0 41.0 31.0 41.0 45 36.533129803904785 39.0 35.0 41.0 31.0 41.0 46 36.48182738992529 39.0 35.0 41.0 31.0 41.0 47 36.361120489738724 39.0 35.0 41.0 31.0 41.0 48 36.34941120711655 39.0 35.0 41.0 31.0 41.0 49 36.355103373611236 39.0 35.0 41.0 31.0 41.0 50 36.2499782045978 39.0 35.0 41.0 31.0 41.0 51 35.51591856920714 38.0 35.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 5.0 9 6.0 10 7.0 11 14.0 12 18.0 13 12.0 14 14.0 15 30.0 16 53.0 17 80.0 18 142.0 19 309.0 20 582.0 21 1017.0 22 1660.0 23 2253.0 24 3018.0 25 4105.0 26 5368.0 27 6162.0 28 6603.0 29 6819.0 30 7822.0 31 9971.0 32 12594.0 33 17195.0 34 32018.0 35 46983.0 36 43541.0 37 62822.0 38 119627.0 39 239742.0 40 274.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.06195442145492 18.508021500569853 23.034173605530167 13.395850472445064 2 31.7902188575405 27.867680509521026 23.134987247708313 17.207113385230166 3 29.7603139806013 27.987515593619573 26.0950406345553 16.157129791223824 4 26.912962637132708 23.123415870540065 31.268555812873394 18.695065679453833 5 28.215931408680433 26.874761241275895 24.644180152076427 20.265127197967242 6 24.14280664545776 35.30284513217524 25.482074668670258 15.07227355369674 7 73.75120270992143 5.7435243878662225 15.228883425508071 5.276389476704281 8 73.00096533817747 9.486944157801883 11.60196998733489 5.910120516685767 9 66.95975538425691 7.286955887691067 13.434527404349886 12.318761323702143 10 38.10945888753097 24.3374594011099 20.776645473610127 16.776436237749003 11 30.524817433785568 22.741718936003945 26.620190943574478 20.113272686636012 12 25.698126546482857 20.395107051090008 30.87037362867292 23.036392773754212 13 24.584262610027153 21.517213612377887 34.20055257288779 19.697971204707173 14 20.27828369529552 26.401127337457815 30.332700870389477 22.98788809685718 15 18.75260554126306 23.051134391242527 36.24646716344333 21.94979290405109 16 21.46189291879271 23.537766280372885 30.653370678764304 24.346970122070104 17 21.399280672471377 24.46664669415265 30.123782033297037 24.01029060007894 18 22.745681736404027 23.338199652224638 30.00901933371059 23.90709927766074 19 22.547700228415817 25.260157846265535 27.62404754092384 24.568094384394808 20 24.585372194139175 24.568094384394808 29.66774296325533 21.178790458210685 21 22.81241529514145 28.06899076984531 28.52820008020708 20.590393854806162 22 21.581410978859253 22.703676052163136 29.427438746994216 26.2874742219834 23 22.343061215755462 26.03258690024997 29.535543941908514 22.08880794208605 24 23.410956667570186 23.57897940453376 28.534065024799204 24.475998903096848 25 21.28372541280492 27.818383272543972 26.847338662507315 24.050552652143793 26 19.859811973046618 23.895527900492496 29.852250949883256 26.39240917657763 27 23.406201307090083 24.308610214197287 27.999403994819826 24.285784483892805 28 18.94694127288319 26.524132661876433 29.91105890782051 24.617867157419866 29 21.621514518908107 24.051820748271822 28.049969327924902 26.276695404895168 30 21.08368324860866 25.918933784775554 29.78345673493779 23.21392623167799 31 22.917667273767687 26.286681661903383 24.852623453120863 25.94302761120807 32 22.527410690367383 28.043153311236757 25.07327217939756 24.3561638189983 33 21.62516029527618 24.685393276237306 25.044264480468943 28.645181948017566 34 20.23691205911864 26.949103376781476 26.347391764032675 26.466592800067207 35 20.03671138290638 24.774318517215196 26.832438533002996 28.356531566875425 36 19.833657490406058 28.767870248404183 24.423372913783727 26.97509934740603 37 19.85616619667854 28.693211088866594 27.90746702553787 23.543155688916997 38 19.813367952357627 28.430398166333 24.102703105408903 27.653530775900464 39 21.85246652622502 27.421627696487533 25.16869641303159 25.557209364255858 40 21.023924218575388 23.49338291589194 27.74293155292637 27.739761312606305 41 18.369640510598906 26.36324296563301 25.962524589176482 29.3045919345916 42 20.084899035771407 24.37914806131879 28.38030836927593 27.155644533633872 43 21.634988040268393 23.271941629535227 27.079558765952257 28.013511564244126 44 21.672713900077195 24.00791291983889 28.268715910009558 26.050657270074357 45 21.029472139135507 23.268612877199157 27.263432704516166 28.43848227914917 46 23.457717712291178 25.690993505762705 25.90260704712721 24.94868173481891 47 19.198658354296548 24.31716986306147 31.73188643565125 24.75228534699073 48 20.5122474309165 24.25138737642007 28.141589273174855 27.09477591948858 49 20.5639223481336 22.865199796470574 30.844219146032366 25.726658709363466 50 20.52762309646883 22.045851185749136 30.21571900257899 27.210806715203045 51 20.112955662604005 22.114011352630587 27.645288151068293 30.12774483369712 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 210.0 1 615.5 2 1021.0 3 4433.0 4 7845.0 5 5046.0 6 2247.0 7 2128.0 8 2009.0 9 1987.0 10 1965.0 11 1906.5 12 1848.0 13 1797.5 14 1747.0 15 1783.5 16 1820.0 17 1781.5 18 1743.0 19 1673.5 20 1604.0 21 1745.0 22 1886.0 23 2001.5 24 2117.0 25 2530.0 26 3785.0 27 4627.0 28 5504.5 29 6382.0 30 7153.5 31 7925.0 32 8832.0 33 9739.0 34 10819.0 35 11899.0 36 12998.0 37 14097.0 38 15693.0 39 17289.0 40 19102.0 41 20915.0 42 23954.5 43 26994.0 44 31085.5 45 35177.0 46 55024.5 47 74872.0 48 68304.0 49 61736.0 50 61190.5 51 60645.0 52 53357.0 53 46069.0 54 41553.0 55 37037.0 56 34688.0 57 32339.0 58 30565.5 59 28792.0 60 27964.0 61 27136.0 62 24668.5 63 22201.0 64 19899.0 65 17597.0 66 14875.0 67 12153.0 68 10189.5 69 8226.0 70 6951.0 71 5676.0 72 4812.5 73 3949.0 74 3443.5 75 2371.0 76 1804.0 77 1313.5 78 823.0 79 617.5 80 412.0 81 349.5 82 287.0 83 174.0 84 61.0 85 42.0 86 23.0 87 28.5 88 34.0 89 19.0 90 4.0 91 2.5 92 1.0 93 1.5 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 630867.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.99243302990107 #Duplication Level Percentage of deduplicated Percentage of total 1 72.74936181572484 23.274290858576194 2 8.935445320531205 5.717332720188749 3 3.3339486743826265 3.1998338907094084 4 1.9225051947343512 2.4602247476870254 5 1.4157806488662217 2.2647133796941237 6 1.1101039707747669 2.130895616474339 7 0.9709028515631759 2.174308112002242 8 0.8573509877093953 2.194299524592989 9 0.7817046528565196 2.2507770380106837 >10 7.79008687356077 43.35608735635573 >50 0.0800833351936764 1.7689358486657207 >100 0.044767081785079404 2.712124295493484 >500 0.0019896480793368623 0.42234218624888265 >1k 0.0044767081785079404 2.6876176275649506 >5k 0.0014922360595026468 3.3862167977354836 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCG 7276 1.153333428440543 No Hit GAATCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTC 7206 1.1422375873203068 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGC 6797 1.0774061727749271 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4777 0.7572119004481135 No Hit GCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTCTGC 3135 0.49693517017057476 Illumina PCR Primer Index 11 (95% over 23bp) GAATGACTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCT 1606 0.25457029770141726 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTAACACCT 1307 0.2071752049164087 No Hit CCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTCTGC 1300 0.2060656208043851 Illumina PCR Primer Index 11 (95% over 23bp) GAACTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTCT 1298 0.20574859677237833 Illumina PCR Primer Index 11 (95% over 21bp) CTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTCTGCT 1259 0.19956662814824677 Illumina PCR Primer Index 11 (95% over 24bp) GAATGATCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTC 1123 0.17800899397178802 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTAACACCTCGTA 1084 0.17182702534765648 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCC 758 0.12015210813055682 No Hit TCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTCTGC 712 0.11286055539440167 Illumina PCR Primer Index 11 (95% over 23bp) CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG 660 0.10461793056222626 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.20495603669236145 0.0 2 0.0 0.0 0.0 1.1095841120236118 0.0 3 0.0 0.0 0.0 1.488110806239667 0.0 4 0.0 0.0 0.0 2.150056985069753 0.0 5 0.0 0.0 0.0 4.5559523639689505 0.0 6 0.0 0.0 0.0 5.567100514054468 0.0 7 0.0 0.0 0.0 6.710289173470795 0.0 8 0.0 0.0 0.0 8.244209952335437 0.0 9 0.0 0.0 0.0 8.87968462449296 0.0 10 0.0 0.0 0.0 11.1324573959329 0.0 11 0.0 0.0 0.0 12.456032729561064 0.0 12 0.0 0.0 0.0 14.583422496342335 0.0 13 0.0 0.0 0.0 15.10714619721748 0.0 14 0.0 0.0 0.0 15.326843851398156 0.0 15 0.0 0.0 0.0 15.869430482177702 0.0 16 0.0 0.0 0.0 16.54643530252811 0.0 17 0.0 0.0 0.0 17.301428034752174 0.0 18 0.0 0.0 0.0 18.103815859761248 0.0 19 0.0 0.0 0.0 18.819180587984473 0.0 20 0.0 0.0 0.0 19.36414489900407 0.0 21 0.0 0.0 0.0 19.954602158616634 0.0 22 0.0 0.0 0.0 20.56566598030964 0.0 23 0.0 0.0 0.0 21.149148711218054 0.0 24 0.0 0.0 0.0 21.583313123051294 0.0 25 0.0 0.0 0.0 21.98720173982789 0.0 26 0.0 0.0 0.0 22.374763618956134 0.0 27 0.0 0.0 0.0 22.82937608085381 0.0 28 0.0 0.0 0.0 23.246896731006693 0.0 29 0.0 0.0 0.0 23.658076900519443 0.0 30 0.0 0.0 0.0 24.139794917153694 0.0 31 0.0 0.0 0.0 24.56429009601073 0.0 32 0.0 0.0 0.0 25.00527052453211 0.0 33 0.0 0.0 0.0 25.404403780828606 0.0 34 1.5851201600337314E-4 0.0 0.0 25.805597693333144 0.0 35 1.5851201600337314E-4 0.0 0.0 26.234848232670277 0.0 36 1.5851201600337314E-4 0.0 0.0 26.639846433558898 0.0 37 1.5851201600337314E-4 0.0 0.0 27.045954218559537 0.0 38 1.5851201600337314E-4 0.0 0.0 27.464108916776436 0.0 39 1.5851201600337314E-4 0.0 0.0 27.884641295233386 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGAC 50 2.1827873E-11 45.0 25 CGTATTT 20 7.030864E-4 45.0 32 GTTAGCG 40 6.8066583E-9 45.0 1 ACGATAT 20 7.030864E-4 45.0 23 TACGCCG 25 3.8887985E-5 45.0 29 GCGTATG 35 1.2107557E-7 45.0 1 CGTTTTT 1905 0.0 41.220474 1 CGACGGT 55 6.002665E-11 40.909092 28 CGGTCTA 55 6.002665E-11 40.909092 31 CGAATAT 50 1.0804797E-9 40.5 14 TACGGCT 795 0.0 40.18868 7 CGTATGG 45 1.925946E-8 40.0 2 ATAACGG 45 1.925946E-8 40.0 2 CGATGAA 630 0.0 39.642857 19 GCGCCCA 40 3.4549157E-7 39.375 33 GGCGTAG 35 6.2438085E-6 38.571426 1 GCAAACG 35 6.2438085E-6 38.571426 1 CCGATGA 640 0.0 38.320312 18 CGGGTCA 30 1.1393383E-4 37.499996 6 ACTTGCG 55 2.744855E-9 36.81818 14 >>END_MODULE