SRR3551545_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551545_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	526741
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

$Per base sequence content$

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCG	7246	1.3756286296301217	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTC	6685	1.2691246741757334	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGC	6372	1.2097026812038554	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3800	0.7214171670707236	No Hit
GCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGC	2740	0.5201797467825744	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCT	1547	0.2936927256469498	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCGGTTTGTT	1327	0.2519264686060132	No Hit
GAACTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCT	1247	0.23673873877294535	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTA	1019	0.1934537087487019	No Hit
CTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGCT	987	0.1873786168154748	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGC	981	0.18623953707799468	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTC	976	0.18529030396342794	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	768	0.1458022063974515	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCC	626	0.11884398594375603	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	603	0.11447751361674903	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATACG	25	3.887918E-5	45.0	1
ACCGGTT	25	3.887918E-5	45.0	39
TAACGCG	20	7.0298027E-4	45.0	1
GTGTCGA	20	7.0298027E-4	45.0	16
ATGCGCT	20	7.0298027E-4	45.0	18
CGATCGA	90	0.0	45.0	41
TATCGTG	20	7.0298027E-4	45.0	1
CGATCAC	30	2.1632532E-6	44.999996	34
ATAGGGT	105	0.0	42.857147	4
CCGATCG	95	0.0	42.63158	40
TATTAGT	70	0.0	41.785713	30
CGATGAA	945	0.0	41.666668	19
TCGAATG	130	0.0	41.53846	44
ATTGCGG	60	3.6379788E-12	41.249996	2
ATGAATG	1010	0.0	41.21287	21
GATGAAT	1010	0.0	41.21287	20
ACGTAGG	50	1.0786607E-9	40.5	2
CCGATGA	935	0.0	40.42781	18
GGTAATC	45	1.9248546E-8	40.0	8
TACGAGG	45	1.9248546E-8	40.0	2